PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT4G26640.1 | ||||||||
Common Name | AtWRKY20, T15N24.90, WRKY20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | WRKY | ||||||||
Protein Properties | Length: 485aa MW: 53601.5 Da PI: 7.1021 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.8 | 8.4e-32 | 139 | 196 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk ers+ d+++++i+Y+g+H+h+k AT4G26640.1 139 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITDIIYKGTHDHPK 196 8****************************************.***************85 PP | |||||||
2 | WRKY | 104.7 | 4.9e-33 | 308 | 366 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+v+g+++prsYY+Ct +gCpv+k+ver+++dpk+v++tYeg+H+h+ AT4G26640.1 308 LDDGYRWRKYGQKVVRGNPNPRSYYKCTAHGCPVRKHVERASHDPKAVITTYEGKHDHD 366 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 23.388 | 133 | 197 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.41E-25 | 136 | 197 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 5.7E-27 | 137 | 197 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.5E-34 | 138 | 196 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.0E-24 | 139 | 195 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 6.4E-37 | 293 | 368 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.1E-29 | 300 | 368 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.205 | 303 | 368 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.7E-38 | 308 | 367 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.4E-25 | 309 | 365 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009961 | Biological Process | response to 1-aminocyclopropane-1-carboxylic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 485 aa Download sequence Send to blast |
MILLPEPSPT TGSLFKPRPV HISASSSSYT GRGFHQNTFT EQKSSEFEFR PPASNMVYAE 60 LGKIRSEPPV HFQGQGHGSS HSPSSISDAA GSSSELSRPT PPCQMTPTSS DIPAGSDQEE 120 SIQTSQNDSR GSTPSILADD GYNWRKYGQK HVKGSEFPRS YYKCTHPNCE VKKLFERSHD 180 GQITDIIYKG THDHPKPQPG RRNSGGMAAQ EERLDKYPSS TGRDEKGSGV YNLSNPNEQT 240 GNPEVPPISA SDDGGEAAAS NRNKDEPDDD DPFSKRRRME GAMEITPLVK PIREPRVVVQ 300 TLSEVDILDD GYRWRKYGQK VVRGNPNPRS YYKCTAHGCP VRKHVERASH DPKAVITTYE 360 GKHDHDVPTS KSSSNHEIQP RFRPDETDTI SLNLGVGISS DGPNHASNEH QHQNQQLVNQ 420 THPNGVNFRF VHASPMSSYY ASLNSGMNQY GQRETKNETQ NGDISSLNNS SYPYPPNMGR 480 VQSGP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-36 | 137 | 368 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 5e-36 | 137 | 368 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.3375 | 0.0 | flower| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 253983_at | 0.0 | ||||
Expression Atlas | AT4G26640 | - | ||||
AtGenExpress | AT4G26640 | - | ||||
ATTED-II | AT4G26640 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | member of WRKY Transcription Factor; Group I | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00455 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT4G26640.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
IntAct | Search Q93WV0 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT4G26640 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY150436 | 0.0 | AY150436.1 Arabidopsis thaliana unknown protein (At4g26640) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_567752.1 | 0.0 | WRKY family transcription factor family protein | ||||
Swissprot | Q93WV0 | 0.0 | WRK20_ARATH; Probable WRKY transcription factor 20 | ||||
TrEMBL | A0A1P8B739 | 0.0 | A0A1P8B739_ARATH; WRKY family transcription factor family protein | ||||
STRING | AT4G26640.2 | 0.0 | (Arabidopsis thaliana) |
Link Out ? help Back to Top | |
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Phytozome | AT4G26640.1 |
Entrez Gene | 828771 |
iHOP | AT4G26640 |
wikigenes | AT4G26640 |