PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo16G0041700
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family NAC
Protein Properties Length: 587aa    MW: 63326.3 Da    PI: 4.1698
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo16G0041700genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.46.5e-54161441129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      l+pGfrFhPtdeelv +yLk+k++gk++++ ++i++vd+yk+ePwdLp k ++++++ ewyfFs  dkkya+ +r+nrat sgyWk+tgkd++v
  Spipo16G0041700  16 LAPGFRFHPTDEELVGYYLKRKIAGKPFRV-DAISDVDLYKSEPWDLPgKsRIQSRDMEWYFFSALDKKYANRSRTNRATGSGYWKTTGKDRPV 108
                      579***************************.99***************6358888999************************************ PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                      ++ +g+ +g+kktLvf+ grapkge+t+Wvmheyrle
  Spipo16G0041700 109 FR-GGRPTGMKKTLVFHIGRAPKGERTNWVMHEYRLE 144
                      **.9*******************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-6312166IPR003441NAC domain
PROSITE profilePS5100559.18916166IPR003441NAC domain
PfamPF023657.9E-2818143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0009962Biological Processregulation of flavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MSSGQKQGAR APAAALAPGF RFHPTDEELV GYYLKRKIAG KPFRVDAISD VDLYKSEPWD  60
LPGKSRIQSR DMEWYFFSAL DKKYANRSRT NRATGSGYWK TTGKDRPVFR GGRPTGMKKT  120
LVFHIGRAPK GERTNWVMHE YRLEDEELAR AGISQDAFVV CRVFHKKGPG PQNGAQYGAP  180
FVEEEWEGDE GEPVFEEDDG EVALNVINDP LIADMDELEQ NQDGSVQDQA DLVDLNSLIE  240
MCDAQALADA MDGNIGDHGQ LTDESQGLAL LNDEFLELND FAPSPLGATY PEEAPSNLPN  300
GSSSDISNLG IVADLEAPAM EDIFNPVGEG YDFSEPFLLD QAADGSSYLE VNDILGAGPG  360
HYSPPGVNGD EEALFFDAPT VNPEDNFLDS LVSGSSGPDL DELIAYFDAP ENMVPSGVDF  420
EAVASPSNDP VVNYDDLQAR RESPQTPEFT PPRGVGFVDE LGDGRARGGF SGRLISMLGA  480
ISSPPALAAE KNPREGGAGD ASLEKTLAAF SPGSVRITPA IIRSWQVEKN AGDVGFLLAY  540
GGGFEKPPKI AGGLLSFIQR NSFHLLFLSV LLLAASYKIC VCAYSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-491516716166NO APICAL MERISTEM PROTEIN
1ut4_B6e-491516716166NO APICAL MERISTEM PROTEIN
1ut7_A6e-491516716166NO APICAL MERISTEM PROTEIN
1ut7_B6e-491516716166NO APICAL MERISTEM PROTEIN
3swm_A6e-491516719169NAC domain-containing protein 19
3swm_B6e-491516719169NAC domain-containing protein 19
3swm_C6e-491516719169NAC domain-containing protein 19
3swm_D6e-491516719169NAC domain-containing protein 19
3swp_A6e-491516719169NAC domain-containing protein 19
3swp_B6e-491516719169NAC domain-containing protein 19
3swp_C6e-491516719169NAC domain-containing protein 19
3swp_D6e-491516719169NAC domain-containing protein 19
4dul_A6e-491516716166NAC domain-containing protein 19
4dul_B6e-491516716166NAC domain-containing protein 19
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00059PBMTransfer from AT5G04410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP71073650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10500.14e-80NAC domain containing protein 53