PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo15G0001600
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family TCP
Protein Properties Length: 364aa    MW: 38741.2 Da    PI: 7.3482
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo15G0001600genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP125.94.2e-39512152105
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg...... 88 
                      ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++  + s +ss+s+ s++      
  Spipo15G0001600  51 PPKRSSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKTDGETIEWLLQQAEPAIIAATGTGTIPANFTsLNISLRSSGSSMSAPshlran 144
                      789******************************************************************9998666777776655555667777 PP

              TCP  89 ......................................................kaaksaa.kskksqksaa 105
                                                                            + ++s++ +++++q++++
  Spipo15G0001600 145 ffnaslagpqtpalrmrgadwegpstaallnfhagglevppdldpnsarkrrweQ-EASQHqHQQQQQQQQH 215
                      8889999999999999999999999999999988888887777776665554431.2222201111111111 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.2E-4356221IPR005333Transcription factor, TCP
PROSITE profilePS5136928.48857111IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0008283Biological Processcell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0010229Biological Processinflorescence development
GO:0010252Biological Processauxin homeostasis
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0042023Biological ProcessDNA endoreduplication
GO:0048467Biological Processgynoecium development
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
ELEEMEGDPC RRPNFPLQLL EKKEDDACSS SGYPSLAMSS SEVTVPPKKP PPKRSSTKDR  60
HTKVDGRGRR IRMPATCAAR VFQLTRELGH KTDGETIEWL LQQAEPAIIA ATGTGTIPAN  120
FTSLNISLRS SGSSMSAPSH LRANFFNASL AGPQTPALRM RGADWEGPST AALLNFHAGG  180
LEVPPDLDPN SARKRRWEQE ASQHQHQQQQ QQQQHEQQQQ QQTQMAGFGQ LSGHGQMPGT  240
LWMVTNPTNV GGVAGDSIWT FPPVGGTTMF RGSMPREGLH FMNFPGPMAL LPSQQLGLGS  300
VVGGGAEGQM GILAALNAYR QLPVAGSGGG ASTSSEQVPA GSQQQQHGGG GSDRLETMST  360
SNS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00224DAPTransfer from AT1G69690Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008808048.11e-116transcription factor TCP15
RefseqXP_010937085.11e-116transcription factor TCP15
TrEMBLA0A444DPA91e-118A0A444DPA9_ENSVE; Uncharacterized protein
STRINGXP_008808048.11e-116(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37443479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47620.12e-39TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14