PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00822.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB | ||||||||
Protein Properties | Length: 377aa MW: 42212.2 Da PI: 5.1076 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.7 | 3.6e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgrWT+eEd++l +++ G g W++ ++ g++R++k+c++rw +yl Rsa1.0_00822.1_g00001.1 14 RGRWTAEEDQILSSYIQSNGEGAWRSLPKNAGLKRCGKSCRLRWINYL 61 8*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.2 | 1.7e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T+eE+el v+++ lG++ W++Ia+ ++ gRt++++k++w+++l Rsa1.0_00822.1_g00001.1 67 RGNITPEEEELVVKLHSTLGNR-WSLIANQLP-GRTDNEIKNYWNSHL 112 7999******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-21 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.587 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.05E-27 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.1E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.48E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.722 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.8E-26 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.1E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.08E-11 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009813 | Biological Process | flavonoid biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MGRAPCCEKV GIKRGRWTAE EDQILSSYIQ SNGEGAWRSL PKNAGLKRCG KSCRLRWINY 60 LRSDLKRGNI TPEEEELVVK LHSTLGNRWS LIANQLPGRT DNEIKNYWNS HLRRKLHNFI 120 IRKPSISHDV PAVIMKAPPV SPRPPTKRRP GRTSRSAMKP KTHTPKNLKM KKTSESPEPE 180 ANVAVIAVAG EEALMLELNG AEAELGPCNY YGTCHEGGAC RNNNNNNSTD GDKEVSSFDE 240 AIIDLLLDES DPPLVFTSCG GNAQLNHLGN FEQAKGSSEI LNQENLDCLQ SFLSMESFLK 300 YEHQVNNAFT DEFIDWDCVW QQGYDNNICD EKEGSDSMVS WLLDGDDEAT IGKGNCENFG 360 EPLDHDEENA LFAWLLS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 8e-24 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Flavonol-specific transcription activator involved in the regulation of several genes of flavonoid biosynthesis. Activates the expression of CHS, CHI, F3H and FLS1. Controls flavonol biosynthesis mainly in the root (PubMed:17419845, PubMed:20731781). Confers tolerance to UV-B (PubMed:19895401). {ECO:0000269|PubMed:15923334, ECO:0000269|PubMed:17419845, ECO:0000269|PubMed:19895401, ECO:0000269|PubMed:20731781}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00627 | PBM | Transfer from PK06182.1 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00822.1_g00001.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By nitrogen deficiency, sucrose and UV LIGHT (PubMed:17053893, PubMed:9839469). Triggered by HY5 in response to light and UV-B (PubMed:19895401). {ECO:0000269|PubMed:17053893, ECO:0000269|PubMed:19895401, ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC966744 | 0.0 | KC966744.1 Brassica napus MYB transcription factor 12 (MYB12.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018473927.1 | 0.0 | PREDICTED: transcription factor MYB12-like | ||||
Swissprot | O22264 | 1e-177 | MYB12_ARATH; Transcription factor MYB12 | ||||
TrEMBL | A0A3P5ZJ53 | 0.0 | A0A3P5ZJ53_BRACM; Uncharacterized protein | ||||
STRING | Bra000453.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47460.1 | 1e-168 | myb domain protein 12 |