PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013635639.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 370aa MW: 40773.5 Da PI: 4.9294 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.8 | 1.6e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgrWT+eEd +l +++ G g+W++ ++ g++R++k+c++rw +yl XP_013635639.1 14 RGRWTAEEDHILSSYIQSNGEGSWRSLPKNAGLKRCGKSCRLRWINYL 61 8*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.2 | 6.7e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T eE+el v+++ lG++ W++Ia +++ gRt++++k++w+++l XP_013635639.1 67 RGNITREEEELVVNLHSTLGNR-WSLIAGHLP-GRTDNEIKNYWNSHL 112 7999******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-21 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.458 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.72E-27 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.4E-10 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.6E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.18E-7 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.719 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.0E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.6E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.38E-11 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
MGRAPCCEKV GIKRGRWTAE EDHILSSYIQ SNGEGSWRSL PKNAGLKRCG KSCRLRWINY 60 LRSDLKRGNI TREEEELVVN LHSTLGNRWS LIAGHLPGRT DNEIKNYWNS HLRRKLHNFI 120 IRKPSISHDA PAVIMNVPPA SPRPPSKRRP GRTSRSAMKP KTRKTKRTSA PPEPEADVAV 180 KEVAGEEAIM MELNGAEAEL GPCDYYGAYH EGGDCCNNNN NLMGTNGDNL VLSFDDNIMD 240 LLLDEADACN VLTSCGGDAE LSHLGDSEVA RGLSETSINQ GNLDCLQPCP SVQSLINYEL 300 PATDASMDEC IDWHEGNRNS LCGEKEGSDS IVSWLLDGDD DATVGKTNCE NFGEPLDHDE 360 ENALVAWLVS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 9e-23 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: In seedlings, predominantly expressed in roots. Expressed predominantly in the root, in the vascular tissue of the hypocotyl-root transition zone and, at low levels, at the region of apical meristem and the apex of cotyledons. {ECO:0000269|PubMed:17419845}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in stems and flower buds (PubMed:9839469). Expressed in seedlings, roots, cotyledons and apical meristems (PubMed:17419845). {ECO:0000269|PubMed:17419845, ECO:0000269|PubMed:9839469}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Flavonol-specific transcription activator involved in the regulation of several genes of flavonoid biosynthesis. Activates the expression of CHS, CHI, F3H and FLS1. Controls flavonol biosynthesis mainly in the root (PubMed:17419845, PubMed:20731781). Confers tolerance to UV-B (PubMed:19895401). {ECO:0000269|PubMed:15923334, ECO:0000269|PubMed:17419845, ECO:0000269|PubMed:19895401, ECO:0000269|PubMed:20731781}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00627 | PBM | Transfer from PK06182.1 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013635639.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By nitrogen deficiency, sucrose and UV LIGHT (PubMed:17053893, PubMed:9839469). Triggered by HY5 in response to light and UV-B (PubMed:19895401). {ECO:0000269|PubMed:17053893, ECO:0000269|PubMed:19895401, ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013635639.1 | 0.0 | PREDICTED: transcription factor MYB12-like | ||||
Swissprot | O22264 | 1e-171 | MYB12_ARATH; Transcription factor MYB12 | ||||
TrEMBL | A0A3P6D1S7 | 0.0 | A0A3P6D1S7_BRAOL; Uncharacterized protein | ||||
STRING | Bo00877s020.1 | 0.0 | (Brassica oleracea) | ||||
STRING | Bo4g198650.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47460.1 | 1e-155 | myb domain protein 12 |