PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027124954.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 733aa MW: 85017.9 Da PI: 5.1377

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027124954.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.9	2.9e-22	126	210	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++Yn YAke+GF +r+++s ++++++e + ++C++eg+++ ++ + ++r+etrtgC a++++++ ++++w+v++++ eHnH++ XP_027124954.1 126 NYYNCYAKELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTMKEAS-----SRRKETRTGCLAMIRLRLVESNRWRVDEVKIEHNHPFD 210 69**************************************98877.....8999*****************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 733 aa Download sequence
MTDDHNFSPA DEGLSPNPDI EITMEGSSED GEQLHQDEGS EQEIDGEEVF GFESTDLGDD 60 TNQVLDFERN GHDHSSEQML EIQCGNLDNG IDRDTVIDDQ NLVSGAKDYL PPVVGMEFES 120 YDDAYNYYNC YAKELGFAIR VKSSWTKRNS KEKRGAVLCC NCEGFKTMKE ASSRRKETRT 180 GCLAMIRLRL VESNRWRVDE VKIEHNHPFD PERVQNCKSH KKMDPGSKRK LEPSVDVEVR 240 TIKLYRTPVI DTVGNRSSNE RESGNQVDQS KHLKLHQGEA EYISNFFGRL QLTNPNFFYV 300 MDLNDEGHLR NVLWIDSRSR AAYGYFGDVV AIDTTCLSKS YNIPLLLFVG VDHHLQSILL 360 ACGFLVDETM ETYIWLLRAW LSCMSGRPPQ TVLTDRCKAL QSAISEVFPR THHHLYLPLV 420 MQSILDKLEV GASKVFQDVL NRTVYNSLKA DEFEMAWEEM IQHFGLRDHK WLQTYYEERE 480 RWAPVYLKDT FFAGLVTFPP GDCMSPFFDG YVNSQTTLKE FFNIYELVLQ KKHQKEALDD 540 LESRKYIPVL RTRCNYEVQL SEVYTKEIFL KFQVELELMS NCFNVTQIHA NGPIITYVIK 600 ERDAEGDMNN ARNFEVMYDK VGLEVRCICS CFNFRGYLCR HALQILTYNG IEDIPSQYIL 660 SRWRKDFKRL YAPDIGSNVI DVTNPVQWFD HLYRRAMQVV EEGMTSQDHY TVAWQAFKES 720 LNKVRLVADR HVQ

Sequence ? help Back to Top

Protein Sequence Length: 733 aa Download sequence

MTDDHNFSPA DEGLSPNPDI EITMEGSSED GEQLHQDEGS EQEIDGEEVF GFESTDLGDD  60
TNQVLDFERN GHDHSSEQML EIQCGNLDNG IDRDTVIDDQ NLVSGAKDYL PPVVGMEFES  120
YDDAYNYYNC YAKELGFAIR VKSSWTKRNS KEKRGAVLCC NCEGFKTMKE ASSRRKETRT  180
GCLAMIRLRL VESNRWRVDE VKIEHNHPFD PERVQNCKSH KKMDPGSKRK LEPSVDVEVR  240
TIKLYRTPVI DTVGNRSSNE RESGNQVDQS KHLKLHQGEA EYISNFFGRL QLTNPNFFYV  300
MDLNDEGHLR NVLWIDSRSR AAYGYFGDVV AIDTTCLSKS YNIPLLLFVG VDHHLQSILL  360
ACGFLVDETM ETYIWLLRAW LSCMSGRPPQ TVLTDRCKAL QSAISEVFPR THHHLYLPLV  420
MQSILDKLEV GASKVFQDVL NRTVYNSLKA DEFEMAWEEM IQHFGLRDHK WLQTYYEERE  480
RWAPVYLKDT FFAGLVTFPP GDCMSPFFDG YVNSQTTLKE FFNIYELVLQ KKHQKEALDD  540
LESRKYIPVL RTRCNYEVQL SEVYTKEIFL KFQVELELMS NCFNVTQIHA NGPIITYVIK  600
ERDAEGDMNN ARNFEVMYDK VGLEVRCICS CFNFRGYLCR HALQILTYNG IEDIPSQYIL  660
SRWRKDFKRL YAPDIGSNVI DVTNPVQWFD HLYRRAMQVV EEGMTSQDHY TVAWQAFKES  720
LNKVRLVADR HVQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	0.0	FAR1 family protein