PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G80010.1
Common NameF18B13.10, F19K16.2, FRS8
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family FAR1
Protein Properties Length: 725aa    MW: 82563.6 Da    PI: 6.2306
Description FAR1-related sequence 8
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G80010.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR173.83.8e-23109193190
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                  +fYn+YA+e+GF +r+++s ++++++e   + ++C+++g++  ++ +     ++r+etrtgC+a++++++ + ++w+v++++l+HnH++ 
  AT1G80010.1 109 SFYNSYARELGFAIRVKSSWTKRNSKEKRGAVLCCNCQGFKLLKDAH-----SRRKETRTGCQAMIRLRLIHFDRWKVDQVKLDHNHSFD 193
                  5*****************************************99888.....8999*******************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-20109193IPR004330FAR1 DNA binding domain
PfamPF105512.0E-26321415IPR018289MULE transposase domain
PROSITE profilePS509668.877604643IPR007527Zinc finger, SWIM-type
PfamPF044347.0E-6615641IPR007527Zinc finger, SWIM-type
SMARTSM005754.8E-5618645IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009639Biological Processresponse to red or far red light
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0009005anatomyroot
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0025022anatomycollective leaf structure
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 725 aa     Download sequence    Send to blast
MIGNSVYISP SPSPSDHSLS PNPNLCISAM EEQLVVDDDD DDLAPPPIPD LDIDLEDDDD  60
ACCHGLLHIA PNHEEETGCD ENAFANEKCL MAPPPTPGME FESYDDAYSF YNSYARELGF  120
AIRVKSSWTK RNSKEKRGAV LCCNCQGFKL LKDAHSRRKE TRTGCQAMIR LRLIHFDRWK  180
VDQVKLDHNH SFDPQRAHNS KSHKKSSSSA SPATKTNPEP PPHVQVRTIK LYRTLALDTP  240
PALGTSLSSG ETSDLSLDHF QSSRRLELRG GFRALQDFFF QIQLSSPNFL YLMDLADDGS  300
LRNVFWIDAR ARAAYSHFGD VLLFDTTCLS NAYELPLVAF VGINHHGDTI LLGCGLLADQ  360
SFETYVWLFR AWLTCMLGRP PQIFITEQCK AMRTAVSEVF PRAHHRLSLT HVLHNICQSV  420
VQLQDSDLFP MALNRVVYGC LKVEEFETAW EEMIIRFGMT NNETIRDMFQ DRELWAPVYL  480
KDTFLAGALT FPLGNVAAPF IFSGYVHENT SLREFLEGYE SFLDKKYTRE ALCDSESLKL  540
IPKLKTTHPY ESQMAKVFTM EIFRRFQDEV SAMSSCFGVT QVHSNGSASS YVVKEREGDK  600
VRDFEVIYET SAAAQVRCFC VCGGFSFNGY QCRHVLLLLS HNGLQEVPPQ YILQRWRKDV  660
KRLYVAEFGS GRVDIMNPDQ WYEHLHRRAM QVVEQGMRSK EHCRAAWEAF RECANKVQFV  720
TEKPS
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1864965840.0
Genevisible262070_at0.0
Expression AtlasAT1G80010-
AtGenExpressAT1G80010-
ATTED-IIAT1G80010-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G80010.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G80010
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0093220.0AC009322.1 Arabidopsis thaliana chromosome I BAC F18B13 genomic sequence, complete sequence.
GenBankAC0117170.0AC011717.6 Arabidopsis thaliana chromosome 1 BAC F19K16 genomic sequence, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_178118.20.0FAR1-related sequence 8
SwissprotQ9S7930.0FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBLA0A178W1160.0A0A178W116_ARATH; FRS8
STRINGAT1G80010.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142332021
Representative plantOGRP3012351
Publications ? help Back to Top
  1. Lin R,Wang H
    Arabidopsis FHY3/FAR1 gene family and distinct roles of its members in light control of Arabidopsis development.
    Plant Physiol., 2004. 136(4): p. 4010-22
    [PMID:15591448]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]