PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027124952.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 762aa MW: 88254.5 Da PI: 4.9426

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027124952.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.8	3.1e-22	155	239	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++Yn YAke+GF +r+++s ++++++e + ++C++eg+++ ++ + ++r+etrtgC a++++++ ++++w+v++++ eHnH++ XP_027124952.1 155 NYYNCYAKELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTMKEAS-----SRRKETRTGCLAMIRLRLVESNRWRVDEVKIEHNHPFD 239 69**************************************98877.....8999*****************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 762 aa Download sequence
MTDDHNFSPA DEGLSPNPDI EITMEGSSED GEQLHQDEGS EQEIDGEEVF GFESTDLGDD 60 TNQVLAIEHV DIANTADQML GINRDDLEND MQVLDFERNG HDHSSEQMLE IQCGNLDNGI 120 DRDTVIDDQN LVSGAKDYLP PVVGMEFESY DDAYNYYNCY AKELGFAIRV KSSWTKRNSK 180 EKRGAVLCCN CEGFKTMKEA SSRRKETRTG CLAMIRLRLV ESNRWRVDEV KIEHNHPFDP 240 ERVQNCKSHK KMDPGSKRKL EPSVDVEVRT IKLYRTPVID TVGNRSSNER ESGNQVDQSK 300 HLKLHQGEAE YISNFFGRLQ LTNPNFFYVM DLNDEGHLRN VLWIDSRSRA AYGYFGDVVA 360 IDTTCLSKSY NIPLLLFVGV DHHLQSILLA CGFLVDETME TYIWLLRAWL SCMSGRPPQT 420 VLTDRCKALQ SAISEVFPRT HHHLYLPLVM QSILDKLEVG ASKVFQDVLN RTVYNSLKAD 480 EFEMAWEEMI QHFGLRDHKW LQTYYEERER WAPVYLKDTF FAGLVTFPPG DCMSPFFDGY 540 VNSQTTLKEF FNIYELVLQK KHQKEALDDL ESRKYIPVLR TRCNYEVQLS EVYTKEIFLK 600 FQVELELMSN CFNVTQIHAN GPIITYVIKE RDAEGDMNNA RNFEVMYDKV GLEVRCICSC 660 FNFRGYLCRH ALQILTYNGI EDIPSQYILS RWRKDFKRLY APDIGSNVID VTNPVQWFDH 720 LYRRAMQVVE EGMTSQDHYT VAWQAFKESL NKVRLVADRH VQ

Sequence ? help Back to Top

Protein Sequence Length: 762 aa Download sequence

MTDDHNFSPA DEGLSPNPDI EITMEGSSED GEQLHQDEGS EQEIDGEEVF GFESTDLGDD  60
TNQVLAIEHV DIANTADQML GINRDDLEND MQVLDFERNG HDHSSEQMLE IQCGNLDNGI  120
DRDTVIDDQN LVSGAKDYLP PVVGMEFESY DDAYNYYNCY AKELGFAIRV KSSWTKRNSK  180
EKRGAVLCCN CEGFKTMKEA SSRRKETRTG CLAMIRLRLV ESNRWRVDEV KIEHNHPFDP  240
ERVQNCKSHK KMDPGSKRKL EPSVDVEVRT IKLYRTPVID TVGNRSSNER ESGNQVDQSK  300
HLKLHQGEAE YISNFFGRLQ LTNPNFFYVM DLNDEGHLRN VLWIDSRSRA AYGYFGDVVA  360
IDTTCLSKSY NIPLLLFVGV DHHLQSILLA CGFLVDETME TYIWLLRAWL SCMSGRPPQT  420
VLTDRCKALQ SAISEVFPRT HHHLYLPLVM QSILDKLEVG ASKVFQDVLN RTVYNSLKAD  480
EFEMAWEEMI QHFGLRDHKW LQTYYEERER WAPVYLKDTF FAGLVTFPPG DCMSPFFDGY  540
VNSQTTLKEF FNIYELVLQK KHQKEALDDL ESRKYIPVLR TRCNYEVQLS EVYTKEIFLK  600
FQVELELMSN CFNVTQIHAN GPIITYVIKE RDAEGDMNNA RNFEVMYDKV GLEVRCICSC  660
FNFRGYLCRH ALQILTYNGI EDIPSQYILS RWRKDFKRLY APDIGSNVID VTNPVQWFDH  720
LYRRAMQVVE EGMTSQDHYT VAWQAFKESL NKVRLVADRH VQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	0.0	FAR1 family protein