PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027124165.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 151aa    MW: 17026.3 Da    PI: 9.5059
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027124165.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.74.7e-26959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+i+n + rqvtfskRr g++KKAeEL vLCda+va+iifs  gkl+e+ s
  XP_027124165.1  9 KKIDNITARQVTFSKRRRGLFKKAEELAVLCDADVALIIFSAIGKLFEFTS 59
                    68***********************************************75 PP
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    
MVREKIKIKK IDNITARQVT FSKRRRGLFK KAEELAVLCD ADVALIIFSA IGKLFEFTSS  60
SFNTFQQIAT AYIASPTPYL RTNLLEDKGK QVVYSSSSSD EIEMSEDIEK SEEEVSPLPH  120
PVRRRQREGT SRSAEAAVFD SAKFTSLRNQ G
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24540.15e-33MIKC_MADS family protein