PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027123772.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 252aa    MW: 28351.3 Da    PI: 10.0304
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027123772.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.93.6e-202163749
                    HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    s  qvtfskRrng++KKA+EL++L++ae+a+++fs+ +k y +
  XP_027123772.1 21 SHLQVTFSKRRNGLFKKASELCTLTEAEIALVVFSPGQKAYSF 63
                    6679**********************************99987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    
MAKKLTKGRQ KVPIVKMETM SHLQVTFSKR RNGLFKKASE LCTLTEAEIA LVVFSPGQKA  60
YSFGHLSFES VVDKYLGRNH TPSIHGSIDR YVVANYQEDI SEQNNKLTAL EKLLEAEKRR  120
GEVFDQMAKE AQQKYWWRAP IKELNLEELQ KLEKALQGLK KKIENELHKS PIEAINIPQY  180
LIGQSNSERN IGLSNGMGVP YGNRASDPNG FSLFGAIARD NVGTTSSNAR ATVIGDSNMS  240
HGNNSNRFYK FL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-31M-type_MADS family protein