PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT2G24840.1 | ||||||||
Common Name | AGL61, DIA, F27C12.24 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 264aa MW: 30264.3 Da PI: 10.1557 | ||||||||
Description | AGAMOUS-like 61 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 67.4 | 1.4e-21 | 72 | 114 | 3 | 45 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 i+ +s rqvtfskRr+g++KKA+EL++LC+ae+ +i+fs+ k AT2G24840.1 72 IKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKK 114 8999***********************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.4E-30 | 62 | 121 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 23.591 | 62 | 122 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.86E-34 | 63 | 130 | No hit | No description |
SuperFamily | SSF55455 | 7.98E-28 | 63 | 140 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.2E-17 | 64 | 84 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.1E-25 | 71 | 118 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.2E-17 | 84 | 99 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.2E-17 | 99 | 120 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009559 | Biological Process | embryo sac central cell differentiation | ||||
GO:0043078 | Cellular Component | polar nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020090 | anatomy | embryo sac central cell |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MYVTKYKNKL PTLQVDLIIM PHQTQACIYK QTLSLHQIFQ QRKATKTLHT KKTMMSKKKE 60 SIGRQKIPMV KIKKESHRQV TFSKRRAGLF KKASELCTLC GAEIGIIVFS PAKKPFSFGH 120 PSVESVLDRY VSRNNMSLAQ SQQLQGSPAA SCELNMQLTH ILSEVEEEKK KGQAMEEMRK 180 ESVRRSMINW WEKPVEEMNM VQLQEMKYAL EELRKTVVTN MASFNEAKDD VFGFLDNKVT 240 VPPYVNMPSG PSNIYNFANG NGCF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3kov_A | 5e-15 | 63 | 134 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3kov_B | 5e-15 | 63 | 134 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3kov_I | 5e-15 | 63 | 134 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3kov_J | 5e-15 | 63 | 134 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_A | 5e-15 | 63 | 134 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_B | 5e-15 | 63 | 134 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_C | 5e-15 | 63 | 134 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_D | 5e-15 | 63 | 134 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_I | 5e-15 | 63 | 134 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_J | 5e-15 | 63 | 134 | 1 | 72 | Myocyte-specific enhancer factor 2A |
5f28_A | 5e-15 | 62 | 134 | 1 | 73 | MEF2C |
5f28_B | 5e-15 | 62 | 134 | 1 | 73 | MEF2C |
5f28_C | 5e-15 | 62 | 134 | 1 | 73 | MEF2C |
5f28_D | 5e-15 | 62 | 134 | 1 | 73 | MEF2C |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 240254526 | 0.0 | ||||
Genevisible | 263525_at | 0.0 | ||||
Expression Atlas | AT2G24840 | - | ||||
AtGenExpress | AT2G24840 | - | ||||
ATTED-II | AT2G24840 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the final stages of embryo sac development. {ECO:0000269|PubMed:18713950}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed exclusively in the central cell of the female gametophyte and in early endosperm. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | Encodes a member of the Agamous-like family of transcription factors. Localized to the nucleus in the central cell and endosperm of the female gametophyte. Loss of function mutations show reduced female fertility. Fifty percent of ovules have defective central cells with abnormal morphology and patterns of gene expression. Upon fertilization 50% of seeds abort. Using yeast two hybrid assays AGL61 was shown to interact with AGL80, another MADS box gene with similar defects in ovule development. These data suggest that AGL61 and 80 together are required for proper differentiation of the central cell. | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT2G24840.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
BioGRID | AT5G48670 | |||||
IntAct | Search Q4PSU4 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT2G24840 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC006585 | 0.0 | AC006585.8 Arabidopsis thaliana chromosome 2 clone F27C12 map mi238, complete sequence. | |||
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. | |||
GenBank | DQ056542 | 0.0 | DQ056542.1 Arabidopsis thaliana MADS-box family protein (At2g24840) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_850058.1 | 0.0 | AGAMOUS-like 61 | ||||
Swissprot | Q4PSU4 | 0.0 | AGL61_ARATH; Agamous-like MADS-box protein AGL61 | ||||
TrEMBL | C0SV61 | 1e-155 | C0SV61_ARATH; Uncharacterized protein At2g24840 (Fragment) | ||||
STRING | AT2G24840.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 | Representative plant | OGRP16 | 17 | 761 |
Link Out ? help Back to Top | |
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Phytozome | AT2G24840.1 |
Entrez Gene | 817021 |
iHOP | AT2G24840 |
wikigenes | AT2G24840 |