PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027122590.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

TCP

Protein Properties

Length: 422aa MW: 43540.8 Da PI: 5.6442

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027122590.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	118.2	1e-36	104	205	2	101
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec........eaesssssasnsssg 88 a+ k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+e+tgt++ +a ++ + ss s++++++ g XP_027122590.1 104 APPKRSSKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLERAEPAIIEATGTGTVPAIAVsvngalkiPTTSSTSMTAAEGDG 198 56799***********************************************************8888844432222222112222222211111 PP TCP 89 kaaksaakskksq 101 a +++++ XP_027122590.1 199 ------ARKRRKR 205 ......1222222 PP

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence
MASVENSQNL EPDDDEVNND AHDLLLGDPH HYTITAVGPA FEQSPRVAAA VDPTPSPPPP 60 PPPFLQSSDI VPMLKEEPAD NDVEGSIPVG LTPIHHLDKP MLLAPPKRSS KDRHTKVEGR 120 GRRIRMPATC AARIFQLTRE LGHKSDGETI RWLLERAEPA IIEATGTGTV PAIAVSVNGA 180 LKIPTTSSTS MTAAEGDGAR KRRKRASTSE FYEVNDNSSF APVAPITPQG LVPVWTVGAH 240 GAPGMVPTSV VPSGAFFMIP PTGATIAAAA AAAGAVPPRP SNQPQLWAIP AAAATPVFGV 300 SGRPISNFVS AMEPGPSVNF ATDGGGGDEG EGRMGSALPN IVGSGDKNFS GKISAMAPFA 360 SSTSSRDGAA TVGTRATGSP TGATSAQVLR DFSLEVYDKR ELQFMVGAAA GAGNDQTPSS 420 KS

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence

MASVENSQNL EPDDDEVNND AHDLLLGDPH HYTITAVGPA FEQSPRVAAA VDPTPSPPPP  60
PPPFLQSSDI VPMLKEEPAD NDVEGSIPVG LTPIHHLDKP MLLAPPKRSS KDRHTKVEGR  120
GRRIRMPATC AARIFQLTRE LGHKSDGETI RWLLERAEPA IIEATGTGTV PAIAVSVNGA  180
LKIPTTSSTS MTAAEGDGAR KRRKRASTSE FYEVNDNSSF APVAPITPQG LVPVWTVGAH  240
GAPGMVPTSV VPSGAFFMIP PTGATIAAAA AAAGAVPPRP SNQPQLWAIP AAAATPVFGV  300
SGRPISNFVS AMEPGPSVNF ATDGGGGDEG EGRMGSALPN IVGSGDKNFS GKISAMAPFA  360
SSTSSRDGAA TVGTRATGSP TGATSAQVLR DFSLEVYDKR ELQFMVGAAA GAGNDQTPSS  420
KS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	8e-61	TCP family protein