PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027121366.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

AP2

Protein Properties

Length: 426aa MW: 47943.9 Da PI: 4.9204

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027121366.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	46.5	9e-15	56	115	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n k+ ++++lg ++ +e Aa+ ++ a++k++g XP_027121366.1 56 SIYRGVTRHRWTGRFEAHLWDkTTWNAiqtKKgRQIYLGAYDNEEAAARTYDLAALKYWG 115 57*****************666699988557***********************98 PP
2	AP2	57.6	3.2e-18	158	210	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 s+y+GV +++ +grW+A+I + g +k+ +lg++gt eeAa a++ a+++++g+ XP_027121366.1 158 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYGTQEEAAMAYDLAALEYRGP 210 89**99******99966...3.6************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence
MKRPHSSCSP SSSCIELKKS RTTKHASSSS RAKRDKKKSQ ISADASSSPI AARRSSIYRG 60 VTRHRWTGRF EAHLWDKTTW NAIQTKKGRQ IYLGAYDNEE AAARTYDLAA LKYWGPGTIL 120 NFPLENYSEE LEEMEKLTKE EYLTTLRRRS SGFSRGVSKY RGVARHHHNG RWEARIGRVF 180 GNKYLYLGTY GTQEEAAMAY DLAALEYRGP NAVTNFDISR YADKLKTLQK MHTENPESST 240 EKQVDEQEDH EEQVQEEKPV VEEQVQEEKP VAELNVPNIA TTKSESQDNL GQHLQQKKPV 300 AEPTVSNVAA TEPEQIVMMD PADEHEDHWN LCLDTALNSL PVSDITFEKT AELPNLFTDA 360 GFEASIDFIF DAPFDIDEFI EEDAAGSPAF EIDVDSFLRG EEKEPEATTS PSQSSSSTIT 420 SVGSNI

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence

MKRPHSSCSP SSSCIELKKS RTTKHASSSS RAKRDKKKSQ ISADASSSPI AARRSSIYRG  60
VTRHRWTGRF EAHLWDKTTW NAIQTKKGRQ IYLGAYDNEE AAARTYDLAA LKYWGPGTIL  120
NFPLENYSEE LEEMEKLTKE EYLTTLRRRS SGFSRGVSKY RGVARHHHNG RWEARIGRVF  180
GNKYLYLGTY GTQEEAAMAY DLAALEYRGP NAVTNFDISR YADKLKTLQK MHTENPESST  240
EKQVDEQEDH EEQVQEEKPV VEEQVQEEKP VAELNVPNIA TTKSESQDNL GQHLQQKKPV  300
AEPTVSNVAA TEPEQIVMMD PADEHEDHWN LCLDTALNSL PVSDITFEKT AELPNLFTDA  360
GFEASIDFIF DAPFDIDEFI EEDAAGSPAF EIDVDSFLRG EEKEPEATTS PSQSSSSTIT  420
SVGSNI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	2e-72	AP2 family protein