PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027118112.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family ERF
Protein Properties Length: 338aa    MW: 37611.8 Da    PI: 6.7769
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027118112.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.8e-1987135355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a+++ ++k++g
  XP_027118112.1  87 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDKEARKIRG 135
                     9*******.**********954...4*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    
MCGGAILEGL IPPRNNNDGT RRLSSADLWP SATDFWPNSH LAKPSRSNPT DAPHKATHET  60
CHDPHDEAGG KQQVLPKGAK RQRKNLYRGI RQRPWGKWAA EIRDPRKGVR VWLGTFNTAE  120
EAARAYDKEA RKIRGKKAKV NFPNEDSTSH PTCIPSQPQY QQVHIPSPPT FCGPSSSNCK  180
FNQLRVGSSD CNASDCYHAN SIDDCVRFNN MMGFRNPSEE VSGSGSSDNE CFLGHLKQVA  240
KAAEEEAASV ITENDTKDNN KAAESEEYQV EKLSEELLAY ESFMKFYQIP ESFMKFYQIP  300
YIDGQSAAAS ANPAQELATS IQLWSFDDVS PANRPMPL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.12e-43ERF family protein