PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027107632.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

WOX

Protein Properties

Length: 215aa MW: 24854.2 Da PI: 9.5445

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027107632.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.7	1.3e-20	6	66	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++t+eql +Lee+++ r+p+a+++++++++l +++ ++V++WFqN++a+e++ XP_027107632.1 6 STRWCPTPEQLMILEEMYRGgIRTPNASQIQRITAHLsfygKIEGKNVFYWFQNHKARERQ 66 68***************99************************************97 PP
2	Wus_type_Homeobox	121.5	3.3e-39	5	67	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ++tRW+PtpeQ++iLee+y+ G+rtPn+++iqrita+L+ yGkie+kNVfyWFQN+kaRerqk XP_027107632.1 5 NSTRWCPTPEQLMILEEMYRGGIRTPNASQIQRITAHLSFYGKIEGKNVFYWFQNHKARERQK 67 689***********************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence
MSPSNSTRWC PTPEQLMILE EMYRGGIRTP NASQIQRITA HLSFYGKIEG KNVFYWFQNH 60 KARERQKLRR KLSKQPYQQQ LLQEQLCLHR CHNQENKFLS SNESPPPALH QLSLDKSADY 120 LHPGGVGSAA AHMTSCTWKR DPPNMYELQN TSMMRSYGDD WTMMMLKMRD AGPTHYPSCC 180 SSNRPLKTLE LFPITTQNVK DHQATTSNPS RNSYS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28610.1	2e-42	WOX family protein