PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_027106285.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 363aa MW: 40706.3 Da PI: 7.5144 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.4 | 1.1e-15 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l++ ++++G+g +W + +++ g++R++k+c++rw++yl XP_027106285.1 14 KGPWSPEEDAKLKEFIEKFGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 36.7 | 9.6e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++ +Ed ++ + + G++ W+ Ia+ ++ gRt++++k++w++ XP_027106285.1 69 GEFSDDEDRIICSLYASIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 789******************.*********.***********97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 363 aa Download sequence |
MGRAPCCDKA NVKKGPWSPE EDAKLKEFIE KFGTGGNWIA LPQKAGLKRC GKSCRLRWLN 60 YLRPNIKHGE FSDDEDRIIC SLYASIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMGM 120 IPLDPRKLPP FSNSLHTTSS PQSQAFSSLS QLYNDCSPYY STSAKSCLTG FESFPSVQPN 180 LLFNGNNNNV NPMATITTAN HHSYLQGHNQ EGLISPMQFY PGKDNMLIFG GTDQASCSSS 240 DGSCSQISYG KEIKQEHMNG GSLQGYNLSN STNGYDHHHH QENQKFMVDY GNQISSTTWG 300 DGRGNDHDQK PSVVLCGNST STTQLQYDLE EVKQLISSSN MSLFFNDENK THESREAMYY 360 YNY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G57620.1 | 5e-78 | MYB family protein |