PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027101426.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 223aa MW: 24935.4 Da PI: 9.828 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 66.4 | 3e-21 | 17 | 63 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ie k qvtfskRr g+ KKA+ELS+LC++e a+i+fs+ gk++ + XP_027101426.1 17 IEIKNHLQVTFSKRRSGLYKKAHELSTLCGVELAIIVFSPAGKVFSF 63 7778888*************************************988 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence |
MAKKPSMGRQ KIKIAKIEIK NHLQVTFSKR RSGLYKKAHE LSTLCGVELA IIVFSPAGKV 60 FSFGHPSVDY IIDKFIARCR NPQPNSSALH LVGAHRNASS VRELNLQLTQ ILSELEVEKK 120 RGEAFDLMRK ASKNHYWWES PVNELGLHEL EQLRDSLENM KNSVTSHASK VAAEANYNNS 180 SFFTLNNCAA AGLYHQYESK PTGVSVGSVH PNIFNFGYDN GGF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 1e-52 | M-type_MADS family protein |