PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027099453.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

ARR-B

Protein Properties

Length: 617aa MW: 67722.6 Da PI: 8.2816

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027099453.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	83.3	2.6e-26	210	260	4	55
G2-like 4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 + W+ eLH++Fv+av++L G++kAtPk+i+elm+v+gLt+e+v+ HLQkYRl XP_027099453.1 210 VIWSIELHQQFVSAVNHL-GIDKATPKKIMELMNVPGLTRENVANHLQKYRL 260 67**************.******************************8 PP
2	Myb_DNA-binding	42	2.1e-13	212	259	4	48
S-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 W+ e+++++v av+ lG + t+k+I++ m+ g+t++++ +++qky+ XP_027099453.1 212 WSIELHQQFVSAVNHLGIDkaTPKKIMELMNvPGLTRENVANHLQKYR 259 ***********************************************7 PP
3	Response_reg	70	1e-23	21	129	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl+vdD+ + +++l+q+l++ y +v+++++++ al+ll+ek+ +D++l D+ p+mdG++ll+ e++lp+i+++ + + + + + G XP_027099453.1 21 VLVVDDDLTCLKILEQMLTRCMY-RVTTCSQATVALNLLREKKgfFDIVLSDVHVPDMDGFKLLELVSL-EMNLPVIMMSVDDRTSIVMKGITHG 113 89*******************.**************99****************87765.569****************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a d+l Kp+ eel + XP_027099453.1 114 ACDYLIKPIRFEELKN 129 ***********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 617 aa Download sequence
MATACKEALP VPLPFPAGLK VLVVDDDLTC LKILEQMLTR CMYRVTTCSQ ATVALNLLRE 60 KKGFFDIVLS DVHVPDMDGF KLLELVSLEM NLPVIMMSVD DRTSIVMKGI THGACDYLIK 120 PIRFEELKNI WQHVVWKRCN KGKENEHLDT MEDYDHRKRG SDEAKYAYSF GNKGADGEPE 180 TSTKKRKDAK QKDDTEIGKD DLITSKKTPV IWSIELHQQF VSAVNHLGID KATPKKIMEL 240 MNVPGLTREN VANHLQKYRL YLRRLSAVVQ KKGGLPSSFC GGIDEPNPKV GSAGRFDVQA 300 LAACGHIPQQ TLAAFHPELG QNVVYTQPSI QFPSNIPKHI SQTVAADNPI SGLDPWSSKN 360 LDKMVAGDNV TGLRSQNGTS MMSTTQLQQQ RQQQEPQQNL SILPKPNYSI TVQPSHLVVP 420 AHSSPSFQVV NSLVSANQNC SPGRSSIINY NIVSPQSNIP ATGIGRTADA QLKSTTVLGG 480 SSAAGSPALS ACSVDANNGV AVQVPSSALT FGPSRKLPVH VPYIPVLQNS PGMPKNTDLG 540 GGWTSILNRF TVDEIGLPVS NVNQEMMHGE NNCNDCFQKK SFLSWRKSTC LHHCYICIFF 600 VVLFFIFIFG SPSGTTF

Sequence ? help Back to Top

Protein Sequence Length: 617 aa Download sequence

MATACKEALP VPLPFPAGLK VLVVDDDLTC LKILEQMLTR CMYRVTTCSQ ATVALNLLRE  60
KKGFFDIVLS DVHVPDMDGF KLLELVSLEM NLPVIMMSVD DRTSIVMKGI THGACDYLIK  120
PIRFEELKNI WQHVVWKRCN KGKENEHLDT MEDYDHRKRG SDEAKYAYSF GNKGADGEPE  180
TSTKKRKDAK QKDDTEIGKD DLITSKKTPV IWSIELHQQF VSAVNHLGID KATPKKIMEL  240
MNVPGLTREN VANHLQKYRL YLRRLSAVVQ KKGGLPSSFC GGIDEPNPKV GSAGRFDVQA  300
LAACGHIPQQ TLAAFHPELG QNVVYTQPSI QFPSNIPKHI SQTVAADNPI SGLDPWSSKN  360
LDKMVAGDNV TGLRSQNGTS MMSTTQLQQQ RQQQEPQQNL SILPKPNYSI TVQPSHLVVP  420
AHSSPSFQVV NSLVSANQNC SPGRSSIINY NIVSPQSNIP ATGIGRTADA QLKSTTVLGG  480
SSAAGSPALS ACSVDANNGV AVQVPSSALT FGPSRKLPVH VPYIPVLQNS PGMPKNTDLG  540
GGWTSILNRF TVDEIGLPVS NVNQEMMHGE NNCNDCFQKK SFLSWRKSTC LHHCYICIFF  600
VVLFFIFIFG SPSGTTF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16110.1	1e-111	ARR-B family protein