PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027096559.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 497aa MW: 55523.1 Da PI: 5.9095

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027096559.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.5	3.6e-14	39	83	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +W++eEd++l + ++ +G+++W+ Ia+++ +t qc+ rw++yl XP_027096559.1 39 SWSQEEDDILREQIRIHGTENWAIIASKFK-DKTTRQCRRRWFTYL 83 6**************************9.***********97 PP
2	Myb_DNA-binding	44.8	2.8e-14	89	132	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g W++eEd+ll +a k +G++ W+ Ia+ + gRt++ +k+r+ + XP_027096559.1 89 KGGWSPEEDLLLCEAQKIFGNR-WTEIAKVVS-GRTDNAVKNRFST 132 688*****************.*****.********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence
MQTVKRRPSS NTGATDDAIA TSQQQQQQQP KQKERHIVSW SQEEDDILRE QIRIHGTENW 60 AIIASKFKDK TTRQCRRRWF TYLNSDFKKG GWSPEEDLLL CEAQKIFGNR WTEIAKVVSG 120 RTDNAVKNRF STLCKKRAKR EALAKENNTS YINLNNKRVI FPSGLSTNGI SEAAGPLKKM 180 RRAHMPDPTE SCNREEELVG ECATSSQLLR PPFAVLAQNI HKSGSNLSTQ QHGNDVKEAP 240 TDAGNNKIQG TFLKKDDPKV LALMQQAELL SSLAAKVNVD STDQSLENAW KVLQDFLNQN 300 KESDEFCFRI SDMDVQLDIL KDLVEDLQGS FEGNQASWRQ PDLYEESSGS SEYSTGSTLP 360 SHLPLDKVEQ CQSELCAPYQ DVRPVSQSTH AGDQHQLVKV ENTMLGSEPT DKDVMPDCDE 420 LKADGVLACG FSTTEFGSPL QETPLFRTIA ATIPSPKFSE SERHFLLRAL GMESTSLTPS 480 TNPSQPPACK RALLQSL

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence

MQTVKRRPSS NTGATDDAIA TSQQQQQQQP KQKERHIVSW SQEEDDILRE QIRIHGTENW  60
AIIASKFKDK TTRQCRRRWF TYLNSDFKKG GWSPEEDLLL CEAQKIFGNR WTEIAKVVSG  120
RTDNAVKNRF STLCKKRAKR EALAKENNTS YINLNNKRVI FPSGLSTNGI SEAAGPLKKM  180
RRAHMPDPTE SCNREEELVG ECATSSQLLR PPFAVLAQNI HKSGSNLSTQ QHGNDVKEAP  240
TDAGNNKIQG TFLKKDDPKV LALMQQAELL SSLAAKVNVD STDQSLENAW KVLQDFLNQN  300
KESDEFCFRI SDMDVQLDIL KDLVEDLQGS FEGNQASWRQ PDLYEESSGS SEYSTGSTLP  360
SHLPLDKVEQ CQSELCAPYQ DVRPVSQSTH AGDQHQLVKV ENTMLGSEPT DKDVMPDCDE  420
LKADGVLACG FSTTEFGSPL QETPLFRTIA ATIPSPKFSE SERHFLLRAL GMESTSLTPS  480
TNPSQPPACK RALLQSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02820.2	1e-158	MYB family protein