PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027096469.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

ARR-B

Protein Properties

Length: 541aa MW: 59333.6 Da PI: 8.5925

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027096469.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	83.6	2.2e-26	134	184	4	55
G2-like 4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 + W+ eLH++Fv+av++L G++kAtPk+i+elm+v+gLt+e+v+ HLQkYRl XP_027096469.1 134 VIWSIELHQQFVSAVNHL-GIDKATPKKIMELMNVPGLTRENVANHLQKYRL 184 67**************.******************************8 PP
2	Myb_DNA-binding	42.3	1.8e-13	136	183	4	48
S-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 W+ e+++++v av+ lG + t+k+I++ m+ g+t++++ +++qky+ XP_027096469.1 136 WSIELHQQFVSAVNHLGIDkaTPKKIMELMNvPGLTRENVANHLQKYR 183 ***********************************************7 PP
3	Response_reg	22.6	5.4e-09	1	53	56	109
SEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS Response_reg 56 mdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109 mdG++ll+ e++lp+i+++ + + + + + Ga d+l Kp+ eel + XP_027096469.1 1 MDGFKLLELVSL-EMNLPVIMMSVDDRTSIVMKGITHGACDYLIKPIRFEELKN 53 789999976655.569***********************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 541 aa Download sequence
MDGFKLLELV SLEMNLPVIM MSVDDRTSIV MKGITHGACD YLIKPIRFEE LKNIWQHVVW 60 KRCNKGKENE HLDTMEDYDH RKRGSDEAKY AYSFGNKGAD GEPETSTKKR KDAKQKDDTE 120 IGKDDLITSK KTPVIWSIEL HQQFVSAVNH LGIDKATPKK IMELMNVPGL TRENVANHLQ 180 KYRLYLRRLS AVVQKKGGLP SSFCGGIDEP NPKVGSAGRF DVQALAACGH IPQQTLAAFH 240 PELGQNVVYT QPSIQFPSNI PKHISQTVAA DNPISGLDPW SSKNLDKMVA GDNVTGLRSQ 300 NGTSMMSTTQ LQQQRQQQEP QQNLSILPKP NYSITVQPSH LVVPAHSSPS FQVVNSLVSA 360 NQNCSPGRSS IINYNIVSPQ SNIPATGIGR TADAQLKSTT VLGGSSAAGS PALSACSVDA 420 NNGVAVQVPS SALTFGPSRK LPVHVPYIPV LQNSPGMPKN TDLGGGWTSI LNRFTVDEIG 480 LPVSNVNQEM MHGENNCNDC FQKKSFLSWR KSTCLHHCYI CIFFVVLFFI FIFGSPSGTT 540 F

Sequence ? help Back to Top

Protein Sequence Length: 541 aa Download sequence

MDGFKLLELV SLEMNLPVIM MSVDDRTSIV MKGITHGACD YLIKPIRFEE LKNIWQHVVW  60
KRCNKGKENE HLDTMEDYDH RKRGSDEAKY AYSFGNKGAD GEPETSTKKR KDAKQKDDTE  120
IGKDDLITSK KTPVIWSIEL HQQFVSAVNH LGIDKATPKK IMELMNVPGL TRENVANHLQ  180
KYRLYLRRLS AVVQKKGGLP SSFCGGIDEP NPKVGSAGRF DVQALAACGH IPQQTLAAFH  240
PELGQNVVYT QPSIQFPSNI PKHISQTVAA DNPISGLDPW SSKNLDKMVA GDNVTGLRSQ  300
NGTSMMSTTQ LQQQRQQQEP QQNLSILPKP NYSITVQPSH LVVPAHSSPS FQVVNSLVSA  360
NQNCSPGRSS IINYNIVSPQ SNIPATGIGR TADAQLKSTT VLGGSSAAGS PALSACSVDA  420
NNGVAVQVPS SALTFGPSRK LPVHVPYIPV LQNSPGMPKN TDLGGGWTSI LNRFTVDEIG  480
LPVSNVNQEM MHGENNCNDC FQKKSFLSWR KSTCLHHCYI CIFFVVLFFI FIFGSPSGTT  540
F

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16110.1	3e-77	ARR-B family protein