PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027089363.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 215aa MW: 24562.3 Da PI: 10.0183 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 94.1 | 6.3e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+ + rqvtfskRr+g+lKKA+ELSvLCdaeva+iifs++gklye+ss XP_027089363.1 9 KRIEDATTRQVTFSKRRKGLLKKAFELSVLCDAEVALIIFSPSGKLYEFSS 59 79***********************************************96 PP | |||||||
2 | K-box | 55.8 | 1.9e-19 | 81 | 159 | 8 | 85 |
K-box 8 sleeakaeslqqelakLkkeienLq.reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 + + + ++ ++e+a L+k+ie L+ ++ R+llG++L+s s+ eLqq+e+qLeksl+ iRs+K l++e i++l++ k XP_027089363.1 81 QMDLESLQHFEEEVAILRKKIELLEeTTRRKLLGDGLDSSSIGELQQVERQLEKSLSIIRSRKILLFCERINQLKEEVK 159 356677899****************77889********************************************98665 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence |
MARGKTQIKR IEDATTRQVT FSKRRKGLLK KAFELSVLCD AEVALIIFSP SGKLYEFSSS 60 SATSTIERYQ KSIKNRPTSK QMDLESLQHF EEEVAILRKK IELLEETTRR KLLGDGLDSS 120 SIGELQQVER QLEKSLSIIR SRKILLFCER INQLKEEVKY AFEASGVAYS FIHILVRNKV 180 YSFHANWHGV NILCISVSNS GENSQKEKCG ITRNV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45660.1 | 2e-56 | MIKC_MADS family protein |