PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_027084499.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 420aa MW: 47307.5 Da PI: 9.2624 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.6 | 5.6e-12 | 78 | 135 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV+ +++gr++A+++d s+n k+ k+++lg ++ +e Aa+a++ a+ k++g XP_027084499.1 78 SRFRGVS--RWTGRFEAHLWDkASWNAtqkKKgKQVYLGAYDEEEAAARAYDLAAIKYWG 135 789***6..48**********888888876447************************987 PP | |||||||
2 | AP2 | 56.3 | 8.1e-18 | 178 | 229 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++gt eeAa+a++ a+ +++g XP_027084499.1 178 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYGTQEEAARAYDIAAIEYRG 229 89****99**********99966...3.6*************************97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 420 aa Download sequence |
MELSIVKSEA SARGRSYCLV ESDVPETKCV RRRRRSPSAL TVLTGEASPG GRDQQQPQIQ 60 QVDQNNGANA TTTVKRSSRF RGVSRWTGRF EAHLWDKASW NATQKKKGKQ VYLGAYDEEE 120 AAARAYDLAA IKYWGISTFT NFPISDYANE IEIMQNLTKE EYLASLRRRS SGFARGVSKY 180 RGVARHHHNG RWEARIGRVF GNKYLYLGTY GTQEEAARAY DIAAIEYRGI NAVTNFDLST 240 YIKWLKPGSS STASHDLLTS QPVETASIHN FNLTDHQEPH RHEFSFNPNS FKSGPLSIPQ 300 KQEVIERKMP LSPCSMSSSP TALSLLLRSS MFREMVEKTS NADNDDQNDG NDLKNQPVQG 360 GGHQQDDFSF FPGSSLSFPY FYPFNSGHKL PELASEEKRV SPFSASRWND AFNTSPFFNS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G54320.3 | 5e-77 | AP2 family protein |