PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027083940.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 205aa    MW: 23127.2 Da    PI: 9.7346
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027083940.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.28e-171057249
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    +ie+ks+rqvtf+kRr+g++KKA+ L+   + e+ ++ fs  g++y +
  XP_027083940.1 10 KIEDKSKRQVTFTKRRQGLFKKASALCNISNYEIGIVTFSLAGNMYAW 57
                    59********************************************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    
MVRKKVDIVK IEDKSKRQVT FTKRRQGLFK KASALCNISN YEIGIVTFSL AGNMYAWGHP  60
TVDSVLQRYM AYRAQKPDEN HQENETSPGD HHQNKREVSL ALSLSLPADE KETPKRSDEE  120
KAGQEKGLVL KNNKNNSSNQ EGEKRVEGHA AAAKSKVMAS WNLPKVDDLE IDELERLMAD  180
MEEMKKKVVD RANQMKSSAG RVPSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112117ETPKRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-22M-type_MADS family protein