PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027080852.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

AP2

Protein Properties

Length: 420aa MW: 47317.4 Da PI: 9.2624

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027080852.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	38.1	3.8e-12	78	135	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV+ +++gr++A+++d s+n k+ k+++lg ++ +e Aa+a++ a+ k++g XP_027080852.1 78 SRFRGVS--RWTGRFEAHLWDkASWNAtqkKKgKQVYLGAYDEEEAAARAYDLAAIKYWG 135 789*6..48******888888876447***********************98 PP
2	AP2	56.3	8.1e-18	178	229	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++gt eeAa+a++ a+ +++g XP_027080852.1 178 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYGTQEEAARAYDIAAIEYRG 229 89**99******99966...3.6***********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence
MELSIVKSEA SARSRSYCLV ESDVPETKCV RRRRRSPSAM TVLTGEASPG GRDQQQPQIQ 60 QVDQNNGANA TTTVKRSSRF RGVSRWTGRF EAHLWDKASW NATQKKKGKQ VYLGAYDEEE 120 AAARAYDLAA IKYWGTSTFT NFPTSDYANE IEIMQNLTKE EYLASLRRRS SGFARGVSKY 180 RGVARHHHNG RWEARIGRVF GNKYLYLGTY GTQEEAARAY DIAAIEYRGI NAVTNFDLST 240 YIKWLKPGSS STASHDLLTS QPVETASIHN FNLTDHQEPH RHEFSFNPNS FKSGPLSVPQ 300 KQEVIERKMP LSPCSMSSSP TALSLLLRSS MFREMVEKTS NADNDDQNDG NDLKNQPVQG 360 GGHQQDDFSF FPGSSLSFPY FYPFNSGHKL PELASEEKRV SPFSASRWND AFNTSPFFNS

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence

MELSIVKSEA SARSRSYCLV ESDVPETKCV RRRRRSPSAM TVLTGEASPG GRDQQQPQIQ  60
QVDQNNGANA TTTVKRSSRF RGVSRWTGRF EAHLWDKASW NATQKKKGKQ VYLGAYDEEE  120
AAARAYDLAA IKYWGTSTFT NFPTSDYANE IEIMQNLTKE EYLASLRRRS SGFARGVSKY  180
RGVARHHHNG RWEARIGRVF GNKYLYLGTY GTQEEAARAY DIAAIEYRGI NAVTNFDLST  240
YIKWLKPGSS STASHDLLTS QPVETASIHN FNLTDHQEPH RHEFSFNPNS FKSGPLSVPQ  300
KQEVIERKMP LSPCSMSSSP TALSLLLRSS MFREMVEKTS NADNDDQNDG NDLKNQPVQG  360
GGHQQDDFSF FPGSSLSFPY FYPFNSGHKL PELASEEKRV SPFSASRWND AFNTSPFFNS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	2e-77	AP2 family protein