PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027077416.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family B3
Protein Properties Length: 287aa    MW: 33051.1 Da    PI: 9.5225
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027077416.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.61.2e-14421171899
                     --HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  18 lpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     +p  f++++ g++    k ++l+  +g+ W+v +  + +++++++++GW+ F++ + Lk g+f+vF++dg+s f  +vk+fr+
  XP_027077416.1  42 VPPLFVKKFsGLV---CKRIKLRCIDGKIWDVDV--EETQEGVFMKNGWQAFADHHLLKLGEFLVFRYDGNSVF--TVKIFRT 117
                     5777888886666...357***************..**********************************9***..****996 PP
2B340.16.7e-132022851097
                     HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
              B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
                      ++ + l+l+k f+++++++   +  ++l +e+ ++W vk+++ + ++   +++GW  F k+n+++egD + + +d+   +   +++v+
  XP_027077416.1 202 RTQMHKLMLSKGFISKNNIE--LGSNVMLCNEKEEKWPVKFTHFRDGR-ACIGTGWMAFWKDNRMCEGDKFKLVFDEGrGG--KMITVC 285
                     556688*********99766..5668***************8766664.56899***************988887754233..467666 PP
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    
MTMEKMVKRG RGRPRKDSSS SSYLSFMDVR PEFFKVFLPD RVPPLFVKKF SGLVCKRIKL  60
RCIDGKIWDV DVEETQEGVF MKNGWQAFAD HHLLKLGEFL VFRYDGNSVF TVKIFRTHGC  120
KEEAFVREKI AADVKIEPLE DQIAATEHTC AKHSCNSDGE GNKLDTSRGV REGKQQMSSR  180
FHSQTVQMER DSEFGSIRSI SRTQMHKLML SKGFISKNNI ELGSNVMLCN EKEEKWPVKF  240
THFRDGRACI GTGWMAFWKD NRMCEGDKFK LVFDEGRGGK MITVCKV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1816KRGRGRPRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.13e-24B3 family protein