PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G66980.1 | ||||||||
Common Name | K8A10.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | B3 | ||||||||
Protein Properties | Length: 334aa MW: 38779.9 Da PI: 5.2155 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 60.7 | 2.4e-19 | 10 | 103 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ffkv+ + s+ lv+p f++ + k+ +k+ l de gr W v+ + + + +r +++tkGW++F++++ L+ gDf+vF++dg+s+f v++ AT5G66980.1 10 FFKVF--LPEFGSHELVIPPAFIDMLE--KPLPKEAFLVDEIGRLWCVETKTEDTEERfcVFFTKGWQSFANDQSLEFGDFLVFSYDGDSRF--SVTI 101 78888..77889999********7666..66999****************88777777899***************************9999..8888 PP E- CS B3 97 fr 98 f AT5G66980.1 102 FA 103 75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.3E-22 | 7 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.874 | 8 | 105 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.69E-21 | 8 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 8.7E-18 | 10 | 103 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.43E-17 | 10 | 102 | No hit | No description |
SMART | SM01019 | 3.2E-21 | 10 | 105 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-13 | 213 | 299 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.41E-14 | 214 | 302 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.925 | 218 | 317 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.38E-8 | 219 | 313 | No hit | No description |
SMART | SM01019 | 1.5E-13 | 221 | 317 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000084 | anatomy | plant sperm cell | ||||
PO:0009005 | anatomy | root | ||||
PO:0009046 | anatomy | flower | ||||
PO:0020094 | anatomy | plant egg cell | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MVDLSKDLQF FKVFLPEFGS HELVIPPAFI DMLEKPLPKE AFLVDEIGRL WCVETKTEDT 60 EERFCVFFTK GWQSFANDQS LEFGDFLVFS YDGDSRFSVT IFANDGCKKD VGVVSTTDRS 120 RVSLDEEEPD DIFTKPDRMR DCDCGQSINR KRKRDSVNED PHVLVDDKPE YVSTYKTKPE 180 HSEKTQRTVN RAGDTCDISW FPEKKHNGFE ESVYKPKHPH FVRNITRGSL QKLELPLTFL 240 RSNGIELEED IELCDESGKK WPLKILNHDR GFKFSHESWL CFCKSHEMIL TNKCLFEFIV 300 PSNGRCSEIL VRIVSGRLPT TMTKNNYQVI DMQP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1yel_A | 4e-13 | 5 | 107 | 6 | 104 | At1g16640 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 18425136 | 0.0 | ||||
Genevisible | 247017_at | 0.0 | ||||
Expression Atlas | AT5G66980 | - | ||||
AtGenExpress | AT5G66980 | - | ||||
ATTED-II | AT5G66980 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G66980.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G66980 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB026640 | 0.0 | AB026640.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K8A10. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_201499.1 | 0.0 | AP2/B3-like transcriptional factor family protein | ||||
Swissprot | Q9FGD2 | 0.0 | Y5698_ARATH; Putative B3 domain-containing protein At5g66980 | ||||
TrEMBL | A0A178UDX4 | 0.0 | A0A178UDX4_ARATH; Uncharacterized protein | ||||
STRING | AT5G66980.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12802 | 21 | 30 | Representative plant | OGRP8585 | 6 | 14 |
Link Out ? help Back to Top | |
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Phytozome | AT5G66980.1 |
Entrez Gene | 836832 |
iHOP | AT5G66980 |
wikigenes | AT5G66980 |
Publications ? help Back to Top | |||
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