PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027077414.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family B3
Protein Properties Length: 288aa    MW: 33073.1 Da    PI: 9.5312
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027077414.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3543e-1728118199
                     EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     ffkv+      +s++l++p  f++++ g++    k ++l+  +g+ W+v +  + +++++++++GW+ F++ + Lk g+f+vF++dg+s f  +v
  XP_027077414.1  28 FFKVF--LPDVSSQQLRVPPLFVKKFsGLV---CKRIKLRCIDGKIWDVDV--EETQEGVFMKNGWQAFADHHLLKLGEFLVFRYDGNSVF--TV 113
                     78888..44555566***********7777...357***************..**********************************9***..** PP

                     EEE-S CS
              B3  95 kvfrk 99 
                     k+fr+
  XP_027077414.1 114 KIFRT 118
                     **996 PP
2B340.16.8e-132032861097
                     HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
              B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
                      ++ + l+l+k f+++++++   +  ++l +e+ ++W vk+++ + ++   +++GW  F k+n+++egD + + +d+   +   +++v+
  XP_027077414.1 203 RTQMHKLMLSKGFISKNNIE--LGSNVMLCNEKEEKWPVKFTHFRDGR-ACIGTGWMAFWKDNRMCEGDKFKLVFDEGrGG--KMITVC 286
                     556688*********99766..5668***************8766664.56899***************988887754233..467666 PP
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    
MVKRGRGRPR KDSSSSSYLS FMDVRPEFFK VFLPDVSSQQ LRVPPLFVKK FSGLVCKRIK  60
LRCIDGKIWD VDVEETQEGV FMKNGWQAFA DHHLLKLGEF LVFRYDGNSV FTVKIFRTHG  120
CKEEAFVREK IAADVKIEPL EDQIAATEHT CAKHSCNSDG EGNKLDTSRG VREGKQQMSS  180
RFHSQTVQME RDSEFGSIRS ISRTQMHKLM LSKGFISKNN IELGSNVMLC NEKEEKWPVK  240
FTHFRDGRAC IGTGWMAFWK DNRMCEGDKF KLVFDEGRGG KMITVCKV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1311KRGRGRPRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.14e-28B3 family protein