PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027076484.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

NAC

Protein Properties

Length: 287aa MW: 33071.5 Da PI: 8.4665

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027076484.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	152.4	2e-47	12	138	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 pGfrFhPt+eel+++yLk+ ++g+k++ +vi ++iy+++Pw+Lp ++k +e+ewyfF++rd+++ +g r+nr+tk+g+Wkatg+d+++ s XP_027076484.1 12 PGFRFHPTEEELLSFYLKRTASGRKIRS-DVIGFLNIYQHDPWELPGMAKIGEREWYFFVHRDRRHGHGGRPNRTTKDGFWKATGSDRQIRSLsd 105 9************************9.99***********888999**********************************98766 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ glkktLvfykgrap+g++tdW+m+eyrl XP_027076484.1 106 PKKVLGLKKTLVFYKGRAPRGSRTDWIMNEYRL 138 7788*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence
MDNNSLGELP LPGFRFHPTE EELLSFYLKR TASGRKIRSD VIGFLNIYQH DPWELPGMAK 60 IGEREWYFFV HRDRRHGHGG RPNRTTKDGF WKATGSDRQI RSLSDPKKVL GLKKTLVFYK 120 GRAPRGSRTD WIMNEYRLPD NHHHLPKEDV VLCKIYRKAT SLKILEHRAA MEDIISKTVN 180 PTLSSTDQSQ EGKIPEENLG ESFSQKQSTI NLPMTKQEDD DLSVPNSSVK FGCLNYNCDL 240 KELQVLDVPK FSMDATTDAF WTQMRSPWLD NWSPSVYANL LNCSPHC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	5e-85	NAC family protein