PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027076418.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family WOX
Protein Properties Length: 279aa    MW: 31000.7 Da    PI: 5.6409
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027076418.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox672.5e-2197157257
                     T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                     r+R+t+t+ ql++Le+ F + n  ps+++++e++++l    +++e++V++WFqNrRa+ k+
  XP_027076418.1  97 RQRWTPTPVQLQILERIFDQgNGAPSKQKIKEITNELlqhgQISETNVYNWFQNRRARSKR 157
                     89*****************99**************************************97 PP
2Wus_type_Homeobox97.21.3e-3197159365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        r+RWtPtp Q++iLe+++++G   P+k++i++it+eL ++G+i+++NV++WFQNr+aR+++kq
     XP_027076418.1  97 RQRWTPTPVQLQILERIFDQGNGAPSKQKIKEITNELLQHGQISETNVYNWFQNRRARSKRKQ 159
                        89***********************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    
MEWDKQPPQQ PQATTAAAAA AAAAAEELNN GGMFVKVMTD EQMEVLRKQI AVYATICEQL  60
VDLHKSLTSH HDLAGARLGN LYCDPLVTSA GHKITGRQRW TPTPVQLQIL ERIFDQGNGA  120
PSKQKIKEIT NELLQHGQIS ETNVYNWFQN RRARSKRKQQ AAASNNIESE VETEVESPND  180
KKTKPEDLQS PHIPTSRNEE LCFQNTDVSS GMLSIDPRSS KPEPMFPSDG SSKSAGSFGQ  240
MSFYGSMLSN PRMDQLLGKM EVPESYSPYL HAEDYNMTG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151159RRARSKRKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.12e-78WOX family protein