PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027075878.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family ARR-B
Protein Properties Length: 321aa    MW: 36598.9 Da    PI: 8.3663
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027075878.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like69.36.3e-22201251354
         G2-like   3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 
                     +++Wt+eLH++Fv+a++qL G+ +  P++il lm+v+gLt+ +v+SHLQk R
  XP_027075878.1 201 KRVWTSELHAKFVDAINQL-GEGRCFPSEILALMNVPGLTRMQVASHLQKCR 251
                     789****************.9*****************************98 PP
2Myb_DNA-binding39.61.2e-12202250247
                      SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqky 47 
                        WT e++ ++vda++qlG g   ++ I + m+  g+t+ q+ s++qk 
   XP_027075878.1 202 RVWTSELHAKFVDAINQLGEGrcFPSEILALMNvPGLTRMQVASHLQKC 250
                      57*********************************************97 PP
3Response_reg23.82.2e-092611515105
                     HHHHHHTTCEEEEEESSHHHHHHHHHHHH.ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HH CS
    Response_reg  15 rqalekegyeevaeaddgeealellkekd.pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpe 105
                     +++le+   + v  ++ ++ al +l + + +D++++ +  p++  ++ll e ++  +++ +i++++++++  a +al++Ga  +  Kp++ e
  XP_027075878.1  26 EEMLEEVLTSGVSRVELASTALMMLSNGWkFDVVMTNVHSPELLTMKLLDEAAK--MNVLVILMSDFEDPFIARRALERGAFLYAKKPTSLE 115
                     555554444456666777778888888888************988888877665..66******************************8765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    
MRRGKREEEE KENRRGERVA LAPMLEEMLE EVLTSGVSRV ELASTALMML SNGWKFDVVM  60
TNVHSPELLT MKLLDEAAKM NVLVILMSDF EDPFIARRAL ERGAFLYAKK PTSLELVKCL  120
WQYVVRERKQ KGKEKENVQK KNESDRKNIS ELLDETPEKN SAPENGMQEK GKGKAEVIIN  180
GQEVMNGELG DLPNYTDSLS KRVWTSELHA KFVDAINQLG EGRCFPSEIL ALMNVPGLTR  240
MQVASHLQKC RRNSWRDPCD RKCRSSASEH TSHDDETQEK IPPKRRFGSM PCGENRSKRT  300
PEPAQALEGV QSLKLKNTRI E
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.13e-29ARR-B family protein