PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027075043.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB_related

Protein Properties

Length: 1130aa MW: 126523 Da PI: 9.5794

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027075043.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	21.6	5.2e-07	46	78	3	37
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtl 37 W++eE ++++a +++G + +k++a+ + +R+ XP_027075043.1 46 QWSKEEITRFYEAYRKYGQD-FKKVAAAVR-NRSV 78 6***************99.******9.9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 1130 aa Download sequence
MAPARKSRSV NKRHLSINEV SPIKGSSNGR RNSKRKRKPT NKLGPQWSKE EITRFYEAYR 60 KYGQDFKKVA AAVRNRSVDM VDALFSMNRA YLALPEGTAS VIGLVAMMTD YYSNLAITDS 120 EQESNDGAGA SRKAQRHTEG KGQPSTTKAS DGHFSRSPTV TAGYGFQSLL KKKRSGGSRA 180 RAVGKRTPRV PVAYSYENNK GEKFFSTTRR GDDDVAHEIA LALTEASQRG GSPQVSQTPS 240 RRTESVMSSP ARNAETRRAE LKMANYKHVE SDVDEEELEG SMEADTGELS RYKTYLKQTG 300 RVGSLVPKGR RFDGKRLDVD DSSDNHLEDT REACSGTEEG QRFGAARYAD ARNSKSSYQG 360 PRKRSKKVLF RRDEDSAFDA LQTLADLSLM LPAEANEDES MVEIKDEHVD HVDESGSLEA 420 IPAPHQRDKR RSSGQKIKGD QSTMARLEMA STKIPKSGKM SLYDVSVVPE VKDEVYPSKS 480 IRKKPKILTS KIRKSETHVN SQLSEPQEAE TRDLGKMIKN KKSSHSSSPK LVKNVEHSSS 540 ADPRIEGSDS AQSTIQAPPA NQVNLLTRVR SRRKRDLNKP QIQKDLKLSE KISNDRSNVP 600 LASVNDTAFS VKGKLANCLS NHRLRRWCAY EWFYNAIDYP WFAKREFVEY LYHVGLGHVP 660 RLTRVEWGVI RSSLGKPRRF SQQFLKEEKE KLNKYRDSVR THYTELRKGI REGLPTDLAR 720 PLTVGQRVIA IHPKTREIHD GSVLTVDHSR CRVQFDRPEL GVEFVMDVDC MPLDPMENIP 780 TMLARHIAVD KFFENYNELR MNEQAKEYIK ISSGDNVENI NGLSNLSSST YPVTNLLKQT 840 KVAPEDANLQ IRAVQMETPT NTYSQPCIPA QVQAKEADVQ ALAQLTRALD KKEAVVSELK 900 RMNDDVVENC SLKESESFKK QYAAVLVQLH EVNEQVSSAL ICLRQRNTYQ GNISLGWPRP 960 VANLGDPGSM LSSLDRSTSQ SQDSGSHISE IIESSRKKAR SMVDVALQAM SSLKGRENTF 1020 EKIEEAIDYV NEQLPSDDSS VPAAPDPNLK NATDRNEAQI PSELITQCVA TLLMIQKCTE 1080 RQFPPADVAQ ILDSAVTSLK PCCPQNLPVY TEIQKCMGIV RNQILALIPT

Sequence ? help Back to Top

Protein Sequence Length: 1130 aa Download sequence

MAPARKSRSV NKRHLSINEV SPIKGSSNGR RNSKRKRKPT NKLGPQWSKE EITRFYEAYR  60
KYGQDFKKVA AAVRNRSVDM VDALFSMNRA YLALPEGTAS VIGLVAMMTD YYSNLAITDS  120
EQESNDGAGA SRKAQRHTEG KGQPSTTKAS DGHFSRSPTV TAGYGFQSLL KKKRSGGSRA  180
RAVGKRTPRV PVAYSYENNK GEKFFSTTRR GDDDVAHEIA LALTEASQRG GSPQVSQTPS  240
RRTESVMSSP ARNAETRRAE LKMANYKHVE SDVDEEELEG SMEADTGELS RYKTYLKQTG  300
RVGSLVPKGR RFDGKRLDVD DSSDNHLEDT REACSGTEEG QRFGAARYAD ARNSKSSYQG  360
PRKRSKKVLF RRDEDSAFDA LQTLADLSLM LPAEANEDES MVEIKDEHVD HVDESGSLEA  420
IPAPHQRDKR RSSGQKIKGD QSTMARLEMA STKIPKSGKM SLYDVSVVPE VKDEVYPSKS  480
IRKKPKILTS KIRKSETHVN SQLSEPQEAE TRDLGKMIKN KKSSHSSSPK LVKNVEHSSS  540
ADPRIEGSDS AQSTIQAPPA NQVNLLTRVR SRRKRDLNKP QIQKDLKLSE KISNDRSNVP  600
LASVNDTAFS VKGKLANCLS NHRLRRWCAY EWFYNAIDYP WFAKREFVEY LYHVGLGHVP  660
RLTRVEWGVI RSSLGKPRRF SQQFLKEEKE KLNKYRDSVR THYTELRKGI REGLPTDLAR  720
PLTVGQRVIA IHPKTREIHD GSVLTVDHSR CRVQFDRPEL GVEFVMDVDC MPLDPMENIP  780
TMLARHIAVD KFFENYNELR MNEQAKEYIK ISSGDNVENI NGLSNLSSST YPVTNLLKQT  840
KVAPEDANLQ IRAVQMETPT NTYSQPCIPA QVQAKEADVQ ALAQLTRALD KKEAVVSELK  900
RMNDDVVENC SLKESESFKK QYAAVLVQLH EVNEQVSSAL ICLRQRNTYQ GNISLGWPRP  960
VANLGDPGSM LSSLDRSTSQ SQDSGSHISE IIESSRKKAR SMVDVALQAM SSLKGRENTF  1020
EKIEEAIDYV NEQLPSDDSS VPAAPDPNLK NATDRNEAQI PSELITQCVA TLLMIQKCTE  1080
RQFPPADVAQ ILDSAVTSLK PCCPQNLPVY TEIQKCMGIV RNQILALIPT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	30	36	RRNSKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	MYB_related family protein