PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT3G21430.2
Common NameALY3, ATALY3, MHC9
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 1132aa    MW: 127569 Da    PI: 8.1946
Description DNA binding
Gene Model
Gene Model ID Type Source Coding Sequence
AT3G21430.2genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding262.1e-084681340
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                      W++eE e+++++ +++G++ Wk++a  +   R+++++
      AT3G21430.2 46 QWSKEELERFYEGYRKFGKE-WKKVAGFVH-SRSAEMV 81
                     6*******************.********9.9999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.1E-104292IPR009057Homeodomain-like
SMARTSM007179.4E-44391IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-54682IPR009057Homeodomain-like
PfamPF002496.6E-74681IPR001005SANT/Myb domain
CDDcd001671.26E-44789No hitNo description
SMARTSM011352.9E-61608709IPR033471DIRP domain
PfamPF065846.3E-30608707IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0051028Biological ProcessmRNA transport
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
GO:0003723Molecular FunctionRNA binding
GO:0005515Molecular Functionprotein binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0025195anatomypollen tube cell
PO:0025281anatomypollen
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 1132 aa     Download sequence    Send to blast
MAPSRSKKSK YKKKPRAKAV SPHKDEESMS KTKQRKRKLS DMLGPQWSKE ELERFYEGYR  60
KFGKEWKKVA GFVHSRSAEM VEALYTMNKA YLSLPEGTAS VVGLTAMMTD HYSVLHGGSD  120
SEQENNEGIE TPRSAPKRSR VKSSDHPSIG LEGLSDRLQF RSSSGFMPSL KKRRTETMPR  180
AVGKRTPRIP ISYTLEKDTR ERYLSPVKRG LNQKGDDTDD DMEHEIALAL AEASQRGGST  240
KNSHTPNRKA KMYPPDKKGE RMRADIDLAI AKLHATDMED VRCEPSLGST EADNADYSGG  300
RNDLTHGEGS SAVEKQQKGR TYYRRRVGIK EEDAKEACSG TDEAPSLGAP DEKFEQEREG  360
KALKFTYKVS RRKSKKSLFT ADEDTACDAL HTLADLSLMM PETATDTESS VQAEEKKAGE  420
AYVSDFKGTD PASMSKSSSL RNSKQRRYGS NDLCNPELER KSPSSSLIQK RRQKALPAKV  480
RENVLKDELA ASSQVIEPCN SKGIGEEYKP VGRGKRSASI RNSHEKKSAK SHDHTSSSNN  540
IVEEDESAPS NAVIKKQVNL PTKVRSRRKI VTEKPLTIDD GKISETIEKF SHCISSFRAR  600
RWCIFEWFYS AIDYPWFARQ EFVEYLDHVG LGHVPRLTRV EWGVIRSSLG KPRRFSEQFL  660
KEEKEKLYLY RDSVRKHYDE LNTGMREGLP MDLARPLNVS QRVICLHPKS REIHDGNVLT  720
VDHCRYRIQF DNPELGVEFV KDTECMPLNP LENMPASLAR HYAFSNYHIQ NPIEEKMHER  780
AKESMLEGYP KLSCETGHLL SSPNYNISNS LKQEKVDISS SNPQAQDGVD EALALQLFNS  840
QPSSIGQIQA READVQALSE LTRALDKKEL VLRELKCMND EVVESQKDGH NNALKDSESF  900
KKQYAAVLFQ LSEINEQVSL ALLGLRQRNT YQENVPYSSI RRMSKSGEPD GQLTYEDNNA  960
SDTNGFHVSE IVESSRIKAR KMVYRAVQAL ELLRKDENNN VNMEEAIDFV NNQLSIDQTE  1020
GSSVQQTQGG QDQRLPSTPN PPSSTPANDS HLNQPDQNDL QVPSDLVSRC IATLLMIQKC  1080
TERQFPPSEV AQVLDSAVAS LQPCCSQNLP IYTEIQKCMG IIRNQILALV PS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.83050.0seed
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible256808_at0.0
Expression AtlasAT3G21430-
AtGenExpressAT3G21430-
ATTED-IIAT3G21430-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed ubiquitously in vegetative and reproductive tissues. {ECO:0000269|PubMed:15246533}.
Function -- GeneRIF ? help Back to Top
  1. ALY3 plays a role in mRNA export and that the efficient nucleocytosolic transport of mRNAs is a requirement for proper plant growth and development.
    [PMID: 29540591]
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT3G21430.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Interaction ? help Back to Top
Source Intact With
IntActSearch Q6A332
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT3G21430
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5834970.0AJ583497.1 Arabidopsis thaliana mRNA for always early 3 protein (Ataly3 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001319608.10.0DNA binding protein
SwissprotQ6A3320.0ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBLA0A1I9LMF30.0A0A1I9LMF3_ARATH; DNA binding protein
STRINGAT3G21430.20.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM127142427
Representative plantOGRP24791321
Publications ? help Back to Top
  1. Bhatt AM,Zhang Q,Harris SA,White-Cooper H,Dickinson H
    Gene structure and molecular analysis of Arabidopsis thaliana ALWAYS EARLY homologs.
    Gene, 2004. 336(2): p. 219-29
    [PMID:15246533]
  2. Wang Y, et al.
    Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis.
    Plant Physiol., 2008. 148(3): p. 1201-11
    [PMID:18775970]
  3. Koroleva OA, et al.
    Dynamic behavior of Arabidopsis eIF4A-III, putative core protein of exon junction complex: fast relocation to nucleolus and splicing speckles under hypoxia.
    Plant Cell, 2009. 21(5): p. 1592-606
    [PMID:19435936]
  4. Bowen AJ, et al.
    PAH-domain-specific interactions of the Arabidopsis transcription coregulator SIN3-LIKE1 (SNL1) with telomere-binding protein 1 and ALWAYS EARLY2 Myb-DNA binding factors.
    J. Mol. Biol., 2010. 395(5): p. 937-49
    [PMID:19962994]
  5. Derkacheva M, et al.
    Arabidopsis MSI1 connects LHP1 to PRC2 complexes.
    EMBO J., 2013. 32(14): p. 2073-85
    [PMID:23778966]
  6. Pfaff C, et al.
    ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development.
    Plant Physiol., 2018. 177(1): p. 226-240
    [PMID:29540591]