PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027073762.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family B3
Protein Properties Length: 282aa    MW: 32312.2 Da    PI: 9.682
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027073762.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.71.2e-14371121899
                     --HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  18 lpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     +p  f++++ g++    k ++l+  +g+ W+v +  + +++++++++GW+ F++ + Lk g+f+vF++dg+s f  +vk+fr+
  XP_027073762.1  37 VPPLFVKKFsGLV---CKRIKLRCIDGKIWDVDV--EETQEGVFMKNGWQAFADHHLLKLGEFLVFRYDGNSVF--TVKIFRT 112
                     5777888886666...357***************..**********************************9***..****996 PP
2B341.42.5e-131972811098
                     HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      ++ + l+l+k f++++++k   +  ++l +e+ ++W vk+++ + ++   +++GW  F k+ng++egD + + +d+  +++ +++v++
  XP_027073762.1 197 RTQMHKLMLSKGFISKNNIK--LGSNVMLCNEKEEKWPVKFTHFRDGR-ACIGTGWMAFWKDNGMCEGDKFKLVFDE-GRGRKMITVCK 281
                     556688***********877..5568***************8766664.56899***************97777664.66666888875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    
MVKPGRGRPR KDSSSSSYLS FMDARPEFFK VFLPDRVPPL FVKKFSGLVC KRIKLRCIDG  60
KIWDVDVEET QEGVFMKNGW QAFADHHLLK LGEFLVFRYD GNSVFTVKIF RTHGCKEEAF  120
VREKIAADVK IEPLEDQIAA TEHTCAKHSC NSDGEGNKLD TSRGVREGKQ QMSSRFHSQT  180
VQTERDSEFG SIRSISRTQM HKLMLSKGFI SKNNIKLGSN VMLCNEKEEK WPVKFTHFRD  240
GRACIGTGWM AFWKDNGMCE GDKFKLVFDE GRGRKMITVC KV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-23B3 family protein