PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027073758.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family B3
Protein Properties Length: 299aa    MW: 34326.5 Da    PI: 9.7663
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027073758.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.93.2e-1739129199
                     EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     ffkv+      +s++l++p  f++++ g++    k ++l+  +g+ W+v +  + +++++++++GW+ F++ + Lk g+f+vF++dg+s f  +v
  XP_027073758.1  39 FFKVF--LPDVSSQQLRVPPLFVKKFsGLV---CKRIKLRCIDGKIWDVDV--EETQEGVFMKNGWQAFADHHLLKLGEFLVFRYDGNSVF--TV 124
                     78888..44555566***********7777...357***************..**********************************9***..** PP

                     EEE-S CS
              B3  95 kvfrk 99 
                     k+fr+
  XP_027073758.1 125 KIFRT 129
                     **996 PP
2B341.32.8e-132142981098
                     HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      ++ + l+l+k f++++++k   +  ++l +e+ ++W vk+++ + ++   +++GW  F k+ng++egD + + +d+  +++ +++v++
  XP_027073758.1 214 RTQMHKLMLSKGFISKNNIK--LGSNVMLCNEKEEKWPVKFTHFRDGR-ACIGTGWMAFWKDNGMCEGDKFKLVFDE-GRGRKMITVCK 298
                     556688***********877..5568***************8766664.56899***************97777664.66666888875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    
MNTLSYFTRE KMVKPGRGRP RKDSSSSSYL SFMDARPEFF KVFLPDVSSQ QLRVPPLFVK  60
KFSGLVCKRI KLRCIDGKIW DVDVEETQEG VFMKNGWQAF ADHHLLKLGE FLVFRYDGNS  120
VFTVKIFRTH GCKEEAFVRE KIAADVKIEP LEDQIAATEH TCAKHSCNSD GEGNKLDTSR  180
GVREGKQQMS SRFHSQTVQT ERDSEFGSIR SISRTQMHKL MLSKGFISKN NIKLGSNVML  240
CNEKEEKWPV KFTHFRDGRA CIGTGWMAFW KDNGMCEGDK FKLVFDEGRG RKMITVCKV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.13e-27B3 family protein