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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C012391P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | NAC | ||||||||
Protein Properties | Length: 450aa MW: 49792.9 Da PI: 6.6539 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.1 | 5.8e-52 | 29 | 156 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 l+pGfrFhPtdeelv +yLk+kv gk++++ ++i+evdiyk+ePwdL +++k++++e+yfFs dkky +g r nrat++gyWkatg+d++v MELO3C012391P1 29 LAPGFRFHPTDEELVIYYLKRKVCGKSFRF-NAISEVDIYKSEPWDLAgkSRLKSRDQEYYFFSVLDKKYGNGARMNRATSQGYWKATGNDRPVR 122 579*************************99.89**************85348889999************************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++++vglkktLvf++grap+g++t+Wvmheyrl MELO3C012391P1 123 H-DSRTVGLKKTLVFHSGRAPDGKRTNWVMHEYRL 156 *.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.75E-59 | 26 | 183 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.244 | 29 | 183 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.5E-26 | 31 | 156 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 450 aa Download sequence Send to blast |
MGSETLTLST PLLPTKPIAA PPAATPTALA PGFRFHPTDE ELVIYYLKRK VCGKSFRFNA 60 ISEVDIYKSE PWDLAGKSRL KSRDQEYYFF SVLDKKYGNG ARMNRATSQG YWKATGNDRP 120 VRHDSRTVGL KKTLVFHSGR APDGKRTNWV MHEYRLVDEE LEKAGAGTGS SQDAYVLCRV 180 FHKSNIGPPN GHRYAPFIEE EWDDAGSVLI PGEEIADGKI ASHDAQSERN SNSVCAAEGS 240 NNGACGEGKD GMQDKAHFIN KDPVISNDPP RSSHNFLFVC KSEKLEDYTP PSIIANPKPF 300 PLMKYKRRRQ SDLTSELSKG SENSSMSNEE PSLSETAIAS QTDITTTSVT TPTTKNFLST 360 LVEYSLLESA EPKDAPAPPP ALETSDLSSS VHPSILKFIQ DLQHEIHKTS MERETLKFEL 420 LSARAMISIL QSRIVVLNKE INDLKSNYD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-48 | 29 | 185 | 15 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00612 | ChIP-seq | Transfer from AT3G10490 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681896 | 0.0 | LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016. | |||
GenBank | LN713264 | 0.0 | LN713264.1 Cucumis melo genomic chromosome, chr_10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008446812.1 | 0.0 | PREDICTED: NAC domain-containing protein 16 | ||||
TrEMBL | A0A1S3BFG8 | 0.0 | A0A1S3BFG8_CUCME; NAC domain-containing protein 16 | ||||
STRING | XP_008446812.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8189 | 32 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10480.1 | 1e-117 | NAC domain containing protein 50 |