PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT3G10480.1
Common NameANAC050, F13M14.24, F18K10.5, NAC050
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 447aa    MW: 50355.2 Da    PI: 5.6675
Description NAC domain containing protein 50
Gene Model
Gene Model ID Type Source Coding Sequence
AT3G10480.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.45.7e-53271541128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                  l+pGfrFhPtdeelv++yLk+kv gk++++ ++i evdiyk+ePwdL   +k+k++++ewyfFs  dkky +g r nrat++gyWkatgkd+e+ + +
  AT3G10480.1  27 LAPGFRFHPTDEELVSYYLKRKVLGKPVRF-DAIGEVDIYKHEPWDLAvfSKLKTRDQEWYFFSALDKKYGNGARMNRATNKGYWKATGKDREIRR-D 122
                  579************************999.99**************8544999999**************************************9.9 PP

          NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                   +l g+kktLvf++grap+g +t+Wvmheyrl
  AT3G10480.1 123 IQLLGMKKTLVFHSGRAPDGLRTNWVMHEYRL 154
                  99****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-6020179IPR003441NAC domain
PROSITE profilePS5100557.71227178IPR003441NAC domain
PfamPF023651.4E-2729154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000005anatomycultured plant cell
PO:0000293anatomyguard cell
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MGRESLAVVS SPPSATAPST AVSATSLAPG FRFHPTDEEL VSYYLKRKVL GKPVRFDAIG  60
EVDIYKHEPW DLAVFSKLKT RDQEWYFFSA LDKKYGNGAR MNRATNKGYW KATGKDREIR  120
RDIQLLGMKK TLVFHSGRAP DGLRTNWVMH EYRLVEYETE TNGSLLQDAY VLCRVFHKNN  180
IGPPSGNRYA PFMEEEWADG GGALIPGIDV RVRVEALPQA NGNNQMDQEM HSASKDLINI  240
NELPRDATPM DIEPNQQNHH ESAFKPQESN NHSGYEEDED TLKREHAEED ERPPSLCILN  300
KEAPLPLLQY KRRRQNESNN NSSRNTQDHC SSTITTVDNT TTLISSSAAA ATNTAISALL  360
EFSLMGISDK KENQQKEETS PPSPIASPEE KVNDLQKEVH QMSVERETFK LEMMSAEAMI  420
SILQSRIDAL RQENEELKKK NASGQAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-492218012167NO APICAL MERISTEM PROTEIN
1ut4_B4e-492218012167NO APICAL MERISTEM PROTEIN
1ut7_A4e-492218012167NO APICAL MERISTEM PROTEIN
1ut7_B4e-492218012167NO APICAL MERISTEM PROTEIN
3swm_A4e-492218015170NAC domain-containing protein 19
3swm_B4e-492218015170NAC domain-containing protein 19
3swm_C4e-492218015170NAC domain-containing protein 19
3swm_D4e-492218015170NAC domain-containing protein 19
3swp_A4e-492218015170NAC domain-containing protein 19
3swp_B4e-492218015170NAC domain-containing protein 19
3swp_C4e-492218015170NAC domain-containing protein 19
3swp_D4e-492218015170NAC domain-containing protein 19
4dul_A4e-492218012167NAC domain-containing protein 19
4dul_B4e-492218012167NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.201140.0flower| silique
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible258926_s_at1e-175
Expression AtlasAT3G10480-
AtGenExpressAT3G10480-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in floral organs, and, at low levels, in other organs. {ECO:0000269|PubMed:25578968}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC051/NAC052 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). {ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00342DAP27203113Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT3G10480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Interaction ? help Back to Top
Source Intact With
BioGRIDAT3G10480, AT3G10490, AT1G14920
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT3G10480
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0597950.0AY059795.1 Arabidopsis thaliana unknown protein (At3g10480) mRNA, complete cds.
GenBankAY0912620.0AY091262.1 Arabidopsis thaliana unknown protein (At3g10480) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_566374.10.0NAC domain containing protein 50
SwissprotQ9SQX90.0NAC50_ARATH; NAC domain containing protein 50
TrEMBLA0A178VL850.0A0A178VL85_ARATH; NAC050
STRINGBostr.22252s0012.1.p0.0(Boechera stricta)
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Ooka H, et al.
    Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana.
    DNA Res., 2003. 10(6): p. 239-47
    [PMID:15029955]
  3. Ishihara T, et al.
    Comparative analysis of expressed sequence tags in resistant and susceptible ecotypes of Arabidopsis thaliana infected with cucumber mosaic virus.
    Plant Cell Physiol., 2004. 45(4): p. 470-80
    [PMID:15111722]
  4. Arabidopsis Interactome Mapping Consortium
    Evidence for network evolution in an Arabidopsis interactome map.
    Science, 2011. 333(6042): p. 601-7
    [PMID:21798944]
  5. Causier B,Ashworth M,Guo W,Davies B
    The TOPLESS interactome: a framework for gene repression in Arabidopsis.
    Plant Physiol., 2012. 158(1): p. 423-38
    [PMID:22065421]
  6. De Clercq I, et al.
    The membrane-bound NAC transcription factor ANAC013 functions in mitochondrial retrograde regulation of the oxidative stress response in Arabidopsis.
    Plant Cell, 2013. 25(9): p. 3472-90
    [PMID:24045019]
  7. Mar
    Large-scale identification of gibberellin-related transcription factors defines group VII ETHYLENE RESPONSE FACTORS as functional DELLA partners.
    Plant Physiol., 2014. 166(2): p. 1022-32
    [PMID:25118255]
  8. Ning YQ, et al.
    Two novel NAC transcription factors regulate gene expression and flowering time by associating with the histone demethylase JMJ14.
    Nucleic Acids Res., 2015. 43(3): p. 1469-84
    [PMID:25578968]
  9. Zhang S, et al.
    C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association.
    Cell Discov, 2019.
    [PMID:26617990]