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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_130755g0010 | ||||||||
Common Name | DAL13 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 206aa MW: 24156.7 Da PI: 9.944 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85.4 | 3.3e-27 | 2 | 50 | 3 | 51 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ien +nrqvtfskRr g+ KKA+ELSvLC+aeva+i+fs+tgkl+ +ss MA_130755g0010 2 IENPTNRQVTFSKRRGGLTKKAQELSVLCNAEVALIVFSNTGKLHQWSS 50 9**********************************************96 PP | |||||||
2 | K-box | 68 | 3e-23 | 65 | 159 | 5 | 99 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 +g l + ++++l e++++ ke+e+Lq +Rh+ Ged++sL+l eL +Le+qLe + +++R +K+++l ++ + q+ke++lq+en+ L+++++ MA_130755g0010 65 QGLGLMDYQHQQLLFEMRRITKENESLQARLRHMRGEDINSLKLPELFNLEKQLELAGTQVRRRKDHVLDNEKTKRQNKERRLQQENMILQEMVD 159 3444888999*********************************************************************************9886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.9E-25 | 1 | 51 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 25.749 | 1 | 52 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.8E-25 | 2 | 48 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.32E-30 | 2 | 84 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.19E-36 | 2 | 66 | No hit | No description |
PRINTS | PR00404 | 9.8E-15 | 14 | 29 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.8E-15 | 29 | 50 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.3E-18 | 73 | 158 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.732 | 74 | 164 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0019252 | Biological Process | starch biosynthetic process | ||||
GO:0043068 | Biological Process | positive regulation of programmed cell death | ||||
GO:0048316 | Biological Process | seed development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MIENPTNRQV TFSKRRGGLT KKAQELSVLC NAEVALIVFS NTGKLHQWSS SSMKKVLERY 60 QKSEQGLGLM DYQHQQLLFE MRRITKENES LQARLRHMRG EDINSLKLPE LFNLEKQLEL 120 AGTQVRRRKD HVLDNEKTKR QNKERRLQQE NMILQEMVDQ HHGHMEEDNG EINFVLCQPL 180 KRLSTAFPAP LLRLQPNQPN LQDIGY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3mu6_A | 2e-17 | 2 | 60 | 10 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_B | 2e-17 | 2 | 60 | 10 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_C | 2e-17 | 2 | 60 | 10 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_D | 2e-17 | 2 | 60 | 10 | 68 | Myocyte-specific enhancer factor 2A |
5f28_A | 2e-17 | 2 | 60 | 11 | 69 | MEF2C |
5f28_B | 2e-17 | 2 | 60 | 11 | 69 | MEF2C |
5f28_C | 2e-17 | 2 | 60 | 11 | 69 | MEF2C |
5f28_D | 2e-17 | 2 | 60 | 11 | 69 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00080 | ChIP-seq | Transfer from AT5G20240 | Download |
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Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF158543 | 0.0 | AF158543.1 Picea abies clone DAL13-1 MADS-box transcription factor (DAL13) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q9XGJ4 | 3e-49 | GGM13_GNEGN; MADS-box protein GGM13 | ||||
TrEMBL | Q9SED9 | 1e-149 | Q9SED9_PICAB; MADS-box transcription factor |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5302 | 12 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26310.1 | 4e-35 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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