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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cagra.0834s0029.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family |
NAC |
Protein Properties |
Length: 449aa MW: 50642.6 Da PI: 6.2481 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cagra.0834s0029.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 170 | 7.5e-53 | 27 | 154 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88
l+pGfrFhPtdeelv++yLk+kv gk++++ ++i evdiyk+ePwdL +++k++++ewyfFs dkky +g r nrat++gyWkatgk
Cagra.0834s0029.1.p 27 LAPGFRFHPTDEELVSYYLKRKVLGKPVRF-DAIGEVDIYKHEPWDLAvfSRLKTRDQEWYFFSALDKKYGNGARMNRATNKGYWKATGK 115
579************************999.99**************8544899999********************************* PP
NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
d+e+ + + +l g+kktLvf++grap+g +t+Wvmheyrl
Cagra.0834s0029.1.p 116 DREIRR-DIQLLGMKKTLVFHSGRAPDGLRTNWVMHEYRL 154
*****9.999****************************98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem |
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 449 aa
Download sequence Send
to blast |
MGRESVAVVS SPPSATAPST AVSATSLAPG FRFHPTDEEL VSYYLKRKVL GKPVRFDAIG 60 EVDIYKHEPW DLAVFSRLKT RDQEWYFFSA LDKKYGNGAR MNRATNKGYW KATGKDREIR 120 RDIQLLGMKK TLVFHSGRAP DGLRTNWVMH EYRLVEYETE NNGSLLQDAY VLCRVFHKNN 180 IGPPSGNRYA PFMEEEWADG GGALIPGVDV SVRVEPLPQA NGNKHMDQEI HSASKNLINI 240 NEPPRDGTPM DIEPNQQNHH ESDIKPQEHN NHNAYDEDEE TLKREHAEED ERPPPLCILN 300 KEAPLPLLQY KRRRQNESNS SSRNSQDHCS STITTVDNTT TLNSSSAAAT NTAISALLEF 360 SLMGISEKKE NQQLRPHKEA SPSTPLVSPE EKVNDLQKEI HQMSVERETF KLEMMSAEAM 420 ISILQSRIDA LRQENEELKK KNANGQAI*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
3swm_A | 3e-49 | 22 | 180 | 15 | 170 | NAC domain-containing protein 19 |
3swm_B | 3e-49 | 22 | 180 | 15 | 170 | NAC domain-containing protein 19 |
3swm_C | 3e-49 | 22 | 180 | 15 | 170 | NAC domain-containing protein 19 |
3swm_D | 3e-49 | 22 | 180 | 15 | 170 | NAC domain-containing protein 19 |
3swp_A | 3e-49 | 22 | 180 | 15 | 170 | NAC domain-containing protein 19 |
3swp_B | 3e-49 | 22 | 180 | 15 | 170 | NAC domain-containing protein 19 |
3swp_C | 3e-49 | 22 | 180 | 15 | 170 | NAC domain-containing protein 19 |
3swp_D | 3e-49 | 22 | 180 | 15 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC051/NAC052 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). {ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AY059795 | 0.0 | AY059795.1 Arabidopsis thaliana unknown protein (At3g10480) mRNA, complete cds. |
GenBank | AY091262 | 0.0 | AY091262.1 Arabidopsis thaliana unknown protein (At3g10480) mRNA, complete cds. |