PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG012696.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 440aa    MW: 49379.7 Da    PI: 6.2508
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG012696.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.11.2e-51391661128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                  l+pGfrFhPtdeelv +yLk+kv++k++++ ++i+evdiyk ePwdL   +++k++++ewyfFs+ dkky +g r nrat +gyWkatgkd+e+ + +
  CCG012696.1  39 LAPGFRFHPTDEELVIYYLKRKVSNKPFRF-NAISEVDIYKNEPWDLAdkSRLKSRDQEWYFFSPLDKKYGNGARMNRATGKGYWKATGKDREIRR-E 134
                  579**************************9.89**************75348899999*************************************9.8 PP

          NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                   +l  +kktLvf++grap g +t+Wvmheyrl
  CCG012696.1 135 CQLLAMKKTLVFHSGRAPGGLRTNWVMHEYRL 166
                  899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.8E-6030191IPR003441NAC domain
PROSITE profilePS5100557.33439190IPR003441NAC domain
PfamPF023657.7E-2741166IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MGPETSSQEQ QLRLALTIPA PPAPAPEKAT PVSTKTTALA PGFRFHPTDE ELVIYYLKRK  60
VSNKPFRFNA ISEVDIYKNE PWDLADKSRL KSRDQEWYFF SPLDKKYGNG ARMNRATGKG  120
YWKATGKDRE IRRECQLLAM KKTLVFHSGR APGGLRTNWV MHEYRLIDEE LERTGAMQID  180
SYVLCRVFHK NNIGPPTGNR YAPFIEEEWD DHGAALIPGE DAADEVVVTY DTGGEMHHTE  240
QDSHSINKSP LAITEVPADS QNAFPVCKTE SVEDCPPLCV LNTEAPFPIL QYKRRKHNNE  300
TGSNRSNASE NSTRTSQDPC SSTTTTAATT SAEMMMATTS ATTMAISALL EFSLMEPLEP  360
KENPRVPPPV LDAASLDSSM SPSCRKFIND LQSEIHKISV ERETLKLEMM SAHAMINILQ  420
SRIDFLNKEN EDLKRSVHAK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A8e-533819219170NAC domain-containing protein 19
3swm_B8e-533819219170NAC domain-containing protein 19
3swm_C8e-533819219170NAC domain-containing protein 19
3swm_D8e-533819219170NAC domain-containing protein 19
3swp_A8e-533819219170NAC domain-containing protein 19
3swp_B8e-533819219170NAC domain-containing protein 19
3swp_C8e-533819219170NAC domain-containing protein 19
3swp_D8e-533819219170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC051/NAC052 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). {ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00612ChIP-seqTransfer from AT3G10490Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1453940.0EF145394.1 Populus trichocarpa clone WS01124_C05 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011024336.10.0PREDICTED: NAC transcription factor NAM-A1
SwissprotQ9SQX91e-152NAC50_ARATH; NAC domain containing protein 50
TrEMBLA9PB020.0A9PB02_POPTR; Uncharacterized protein
STRINGPOPTR_0010s23630.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81893241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.11e-149NAC domain containing protein 50
Publications ? help Back to Top
  1. Zhang S, et al.
    C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association.
    Cell Discov, 2019.
    [PMID:26617990]