PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 317848
Common NameARALYDRAFT_317848
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 455aa    MW: 51079 Da    PI: 5.7976
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
317848genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.45.9e-53271541128
     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvg 101
             l+pGfrFhPtdeelv++yLk+kv gk++++ ++i evdiyk+ePwdL   +k+k++++ewyfFs  dkky +g r nrat++gyWkatgkd+e+ + + +l g
  317848  27 LAPGFRFHPTDEELVSYYLKRKVLGKPVRF-DAIGEVDIYKHEPWDLAvfSKLKTRDQEWYFFSALDKKYGNGARMNRATNKGYWKATGKDREIRR-DIQLLG 127
             579************************999.99**************8544999999**************************************9.999*** PP

     NAM 102 lkktLvfykgrapkgektdWvmheyrl 128
             +kktLvf++grap+g +t+Wvmheyrl
  317848 128 MKKTLVFHSGRAPDGLRTNWVMHEYRL 154
             *************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-6020179IPR003441NAC domain
PROSITE profilePS5100557.71227178IPR003441NAC domain
PfamPF023651.5E-2729154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MGRESLAVVS SPPSATAPST AVSATSLAPG FRFHPTDEEL VSYYLKRKVL GKPVRFDAIG  60
EVDIYKHEPW DLAVFSKLKT RDQEWYFFSA LDKKYGNGAR MNRATNKGYW KATGKDREIR  120
RDIQLLGMKK TLVFHSGRAP DGLRTNWVMH EYRLVEYETE TNGSLLQDAY VLCRVFHKNN  180
IGPPSGNRYA PFMEEEWADG GGALIPGIDV RVRVEALPQA NGNNQMDQEI HSTSKDLINI  240
NELPRDATPM DIEPNQQNHH ESAFKPQENN NHSGYEEDEE TLKREHAEED ERPPPLSILN  300
KEAPLPLLQY KRRRQNESNN NSSRSTQDHC SSSTITTVDN TTTLISSSSA AAATNTAISA  360
LLEFSLMGIS EKKENQQQPL SPHKEASPPS PIASPEEKVD DLQKEIHQMS VERETFKLEM  420
MSAEAMISIL QSRIDALRQE NEELKKKNAS GQAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-492218012167NO APICAL MERISTEM PROTEIN
1ut4_B5e-492218012167NO APICAL MERISTEM PROTEIN
1ut7_A5e-492218012167NO APICAL MERISTEM PROTEIN
1ut7_B5e-492218012167NO APICAL MERISTEM PROTEIN
3swm_A5e-492218015170NAC domain-containing protein 19
3swm_B5e-492218015170NAC domain-containing protein 19
3swm_C5e-492218015170NAC domain-containing protein 19
3swm_D5e-492218015170NAC domain-containing protein 19
3swp_A5e-492218015170NAC domain-containing protein 19
3swp_B5e-492218015170NAC domain-containing protein 19
3swp_C5e-492218015170NAC domain-containing protein 19
3swp_D5e-492218015170NAC domain-containing protein 19
4dul_A5e-492218012167NAC domain-containing protein 19
4dul_B5e-492218012167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC051/NAC052 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). {ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00342DAPTransfer from AT3G10480Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap317848
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0597950.0AY059795.1 Arabidopsis thaliana unknown protein (At3g10480) mRNA, complete cds.
GenBankAY0912620.0AY091262.1 Arabidopsis thaliana unknown protein (At3g10480) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002882675.10.0NAC domain-containing protein 78 isoform X1
SwissprotQ9SQX90.0NAC50_ARATH; NAC domain containing protein 50
TrEMBLD7L8Z50.0D7L8Z5_ARALL; ANAC050
STRINGfgenesh1_pm.C_scaffold_30008640.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17802880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.10.0NAC domain containing protein 50
Publications ? help Back to Top
  1. Zhang S, et al.
    C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association.
    Cell Discov, 2019.
    [PMID:26617990]