PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 0100010458
Common NameOT_ostta01g04630
Organism
Ostreococcus tauri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family ERF
Protein Properties Length: 352aa    MW: 36223.6 Da    PI: 10.6241
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
0100010458genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.3e-19146196155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GVr+++ +g+++AeIrdp+    r  r +lg+f++aeeAa a++aa+++++g
  0100010458 146 SVYRGVRQRP-WGKYAAEIRDPT----RgSRLWLGTFDSAEEAALAYDAAARAIRG 196
                 78********.**********84....35***********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.68E-17146203No hitNo description
SuperFamilySSF541717.19E-22146204IPR016177DNA-binding domain
PfamPF008474.4E-13146196IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-30147204IPR001471AP2/ERF domain
PROSITE profilePS5103222.392147204IPR001471AP2/ERF domain
SMARTSM003805.1E-33147210IPR001471AP2/ERF domain
PRINTSPR003671.8E-10148159IPR001471AP2/ERF domain
PRINTSPR003671.8E-10170186IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008219Biological Processcell death
GO:0009723Biological Processresponse to ethylene
GO:0009735Biological Processresponse to cytokinin
GO:0009753Biological Processresponse to jasmonic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051707Biological Processresponse to other organism
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MAHAAFGTSP GSFGASPTFY GSSPTAIPQV SRPMAQPERG LGFPGLSSSL PGKHHIGSPN  60
SGFSAFSPPM NMKDSPRSLA SFSSSPPVRS GGVHKPSTSV TKVKRMELAR AAVSEATAAA  120
QAVASLPNAA AVSSPPLNSS GKPQKSVYRG VRQRPWGKYA AEIRDPTRGS RLWLGTFDSA  180
EEAALAYDAA ARAIRGDAAV TNFGKDVPIP ASVRSQLPPL PTRPVQGRGG GIPRDDSALS  240
GRMSKLSTST KPANLEEEAE MLLMLQGADS GKGSTPERSE SIEDGAGGMD LDEDNGASSV  300
TVGLTLRAQK SNAQPIAPMA SMPRETGDTS NAMISALKAS NVSTRPRRGN A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-211482031571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00109PBMTransfer from AT3G16770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003074521.20.0DNA-binding domain
TrEMBLA0A1Y5I6570.0A0A1Y5I657_OSTTA; Putative ethylene responsive element bi
STRINGA0A090LY490.0(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1321540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.35e-15related to AP2 2
Publications ? help Back to Top
  1. Derelle E, et al.
    Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52
    [PMID:16868079]