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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
- The flowchart for construction of PlantTFDB
- Data source
- Data source (TFext)
- Pipeline to construct comprehensive protein dataset
- Family assignment rules
- List of studies which use the Family assignment rules
- Thresholds for domain identification
- Summary of TFs in different taxonomic lineages of green plants and the origination stage of TF families
- Pipeline for parsing BLAST reciprocal best hits (RBHs) and inferring orthologous groups
- Pipeline for GO annotation
- Curation and projection of TF binding motifs
- Transcription factor information
- Multiple sequence alignment
- Phylogenetic trees
- Quick search
- TF prediction server
- Help for PlantRegMap
The flowchart for construction of PlantTFDB
![The flowchart for construction of PlantTFDB](images/PlantTFDB_workflow.png)
The flowchart for construction of PlantTFDB 4.0. Items marked with '(W)' are web services. RBH means BLAST reciprocal best hit, and OG means orthologous group.
Links for web services: Transcription Factor Prediction, binding site prediction, Regulation prediction, GO enrichment, TF enrichment.
Links for web services: Transcription Factor Prediction, binding site prediction, Regulation prediction, GO enrichment, TF enrichment.