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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
- The flowchart for construction of PlantTFDB
- Data source
- Data source (TFext)
- Pipeline to construct comprehensive protein dataset
- Family assignment rules
- List of studies which use the Family assignment rules
- Thresholds for domain identification
- Summary of TFs in different taxonomic lineages of green plants and the origination stage of TF families
- Pipeline for parsing BLAST reciprocal best hits (RBHs) and inferring orthologous groups
- Pipeline for GO annotation
- Curation and projection of TF binding motifs
- Transcription factor information
- Multiple sequence alignment
- Phylogenetic trees
- Quick search
- TF prediction server
- Help for PlantRegMap
The flowchart for construction of PlantTFDB
The flowchart for construction of PlantTFDB 4.0. Items marked with '(W)' are web services. RBH means BLAST reciprocal best hit, and OG means orthologous group.
Links for web services: Transcription Factor Prediction, binding site prediction, Regulation prediction, GO enrichment, TF enrichment.
Links for web services: Transcription Factor Prediction, binding site prediction, Regulation prediction, GO enrichment, TF enrichment.
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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