PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma48g00330.1

Common Name

ZOSMA_48G00330

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

bHLH

Protein Properties

Length: 397aa MW: 40712.9 Da PI: 5.9023

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma48g00330.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.1	2.7e-12	200	245	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Zosma48g00330.1 200 HSIAERLRRERIADRMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 245 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.87E-13	193	249	No hit	No description
SuperFamily	SSF47459	1.07E-16	193	253	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.352	195	244	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.7E-16	197	252	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-9	200	245	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-13	201	250	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048767	Biological Process	root hair elongation
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
MQQPTSTEMQ QRDHYEPFTT NDDFLDQMLA NIPSWPDLST SDGLKPPWDM PTQGGDDSVL 60 LASRLRQHQI SGGVGGGGDG GGPSKAVMGA LQQVIMYADS TLGNGAPDSG DADASNAFKS 120 PNLSGGGDSI YNGFGASLSR VPGQQPFQSH TQVGGGGVQS FVAQAGAGMG QSQSASAGSG 180 GTAPPRQRVR ARRGQATDPH SIAERLRRER IADRMKALQE LVPNANKTDK ASMLDEIIDY 240 VKFLQLQVKV LSVSRLGGAA AVAPLVADMS SNGGGGGRSS ATGGNENNTL AVTEHQVAKL 300 MEEDMGSAMQ YLQGKGLCLM PISLASAIST ATGHPRTTTI APQQHNNNAD GPSSPNLSVL 360 TAQSGMAGDG DGSRPAPAQG SGGKDNSKNI GSISNQ*

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

MQQPTSTEMQ QRDHYEPFTT NDDFLDQMLA NIPSWPDLST SDGLKPPWDM PTQGGDDSVL  60
LASRLRQHQI SGGVGGGGDG GGPSKAVMGA LQQVIMYADS TLGNGAPDSG DADASNAFKS  120
PNLSGGGDSI YNGFGASLSR VPGQQPFQSH TQVGGGGVQS FVAQAGAGMG QSQSASAGSG  180
GTAPPRQRVR ARRGQATDPH SIAERLRRER IADRMKALQE LVPNANKTDK ASMLDEIIDY  240
VKFLQLQVKV LSVSRLGGAA AVAPLVADMS SNGGGGGRSS ATGGNENNTL AVTEHQVAKL  300
MEEDMGSAMQ YLQGKGLCLM PISLASAIST ATGHPRTTTI APQQHNNNAD GPSSPNLSVL  360
TAQSGMAGDG DGSRPAPAQG SGGKDNSKNI GSISNQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	204	209	RLRRER

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00659	PBM	Transfer from Pp3c14_15890	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017627595.1	1e-116	PREDICTED: transcription factor bHLH69-like
Refseq	XP_023874690.1	1e-116	transcription factor bHLH66-like
Swissprot	Q9ZUG9	1e-83	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A0K9NZI2	0.0	A0A0K9NZI2_ZOSMR; Transcription factor bHLH66
STRING	Gorai.009G055200.1	1e-114	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1419	37	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	9e-71	LJRHL1-like 1

Link Out ? help Back to Top
Phytozome	Zosma48g00330.1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]