PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c14_15890V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 482aa    MW: 49169.6 Da    PI: 7.5024
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c14_15890V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.2e-11291336555
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         h+++Er RR+ri +++  L+el+P++      K +Ka++L + ++Y+k Lq
  Pp3c14_15890V3.1.p 291 HSIAERLRRERIAERMKALQELVPNS-----NKTDKASMLDEIIDYVKFLQ 336
                         99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.63E-17284345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.66E-13284340No hitNo description
PROSITE profilePS5088817.453286335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-16288345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-9291336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-14292341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MAQQPSTTMM MAMQQQQQQH QVHGGGHHHG GMGFQHPGMG SQQQGAGGGG GPVMGEFLEH  60
MFGIPGGGMF DMGAGGRGGS WDYNVGSAAG KGFGVGGISS GVGLSKKGNE GVDYGLSEVQ  120
IRHHHQQQQQ QGGGARGEVA MPVGREARNG AAVHGDSLTR SVSLGSSASE DSGPQQGKSD  180
QLMVSPSHLQ QPYGGGGGGS GSGVSPLPMN FPQAKAENVL LVGGMDSHNA LGKRFRDDDD  240
GRPRTTGVMS TGSAQGSGYA NPGGVPSGQP LPGIGARPRV RARRGQATDP HSIAERLRRE  300
RIAERMKALQ ELVPNSNKTD KASMLDEIID YVKFLQLQVK VLSMSRLGGA GALPSLVNND  360
LPSEGANTFA ASAGSSGIPN PAQDGLALTE RQVTRMMEDD MGSAMQYLQS KGLCLMPISL  420
ATAISTTGKG SAQATANAGE RLGSAAAANT GKSVTDPSSA GGSKEDGSET ARVTECATQG  480
T*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1295300RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.98840.0protonema
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBM25215497Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024394844.10.0transcription factor bHLH85-like isoform X2
TrEMBLA0A2K1JI030.0A0A2K1JI03_PHYPA; Uncharacterized protein
STRINGPP1S209_22V6.20.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.18e-56LJRHL1-like 1