PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma170g00120.1
Common NameZOSMA_170G00120
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 329aa    MW: 37902.1 Da    PI: 5.0768
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma170g00120.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.6e-171461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +grWT+eEde+l+++++ +G g+W++ ++  g+ R++k+c++rw +yl
  Zosma170g00120.1 14 KGRWTAEEDEILLNYIRVHGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                      79******************************99************97 PP
2Myb_DNA-binding51.13e-1667112148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+ ++eE++l++++++ lG++ W++Ia+ +  gRt++++k++w+++l
  Zosma170g00120.1  67 RGNISQEEEDLIIQLHASLGNR-WSLIAKQLS-GRTDNEIKNYWNSHL 112
                       7899******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-23564IPR009057Homeodomain-like
PROSITE profilePS5129417.85961IPR017930Myb domain
SuperFamilySSF466891.98E-2811108IPR009057Homeodomain-like
SMARTSM007173.1E-131363IPR001005SANT/Myb domain
PfamPF002492.3E-151461IPR001005SANT/Myb domain
CDDcd001671.62E-91661No hitNo description
PROSITE profilePS5129425.35662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.2E-2565116IPR009057Homeodomain-like
SMARTSM007171.0E-1566114IPR001005SANT/Myb domain
PfamPF002491.4E-1467112IPR001005SANT/Myb domain
CDDcd001671.02E-971112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009813Biological Processflavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MGRAPCCEKV GLKKGRWTAE EDEILLNYIR VHGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LREDIKRGNI SQEEEDLIIQ LHASLGNRWS LIAKQLSGRT DNEIKNYWNS HLSRRMFNSL  120
WKYDHDEEAV DDNPISMNLE KSRHSSSTNR KRRTTRVSRI KNNKCLMSLK DASDTDTLPS  180
PPPPSPPQIK KTSTDGKVLQ NDAEYFNQND QEIDKELISW LDTMVNGDEN SNSDKINDEN  240
MIKGGKDLEW EDWINGFLSE NEGYMSAGLM DFEMETADFW NPTVVKNDKS LTLNQNGNLD  300
DLPNHQHHQQ QPIMEESLEN WVFSDIST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-231211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00627PBMTransfer from PK06182.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006574536.12e-72transcription factor MYB12
RefseqXP_028192980.12e-72transcription factor MYB12-like
TrEMBLA0A0K9PSN60.0A0A0K9PSN6_ZOSMR; Uncharacterized protein
STRINGGLYMA02G01740.16e-72(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.12e-67myb domain protein 12