PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma135g00380.1
Common NameZOSMA_135G00380
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family GRAS
Protein Properties Length: 599aa    MW: 64723.2 Da    PI: 5.3435
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma135g00380.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS399.43.7e-1222245951373
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                       l+++Ll+cA+a ++++  la++l++++  l +++g +m+++a+yf+ ALa+r++       ++ p+s+ s+   s+ l +   f+e+ P+lkf
  Zosma135g00380.1 224 LIHALLSCADAAQQENYLLAESLIKQITLLTTSQGGAMRKVATYFVGALARRIYP------RSPPSSPLSP--PSDLLEM--HFYEAGPYLKF 306
                       689***************************************************9......4444444442..3444444..5********** PP

              GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                       +h+taNqaIlea++ +++vH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p+s+++++l+ +g+rLa+fAe+l+v+fe++ +va++l
  Zosma135g00380.1 307 AHFTANQAILEAFADKTHVHVIDFGMKQGMQWPALIQALAIRPGGPPLFRLTGIGPPHSNDSDALQVVGWRLAQFAESLHVKFEYRGFVANSL 399
                       ********************************************************************************************* PP

              GRAS 187 edleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak.... 274
                       +dle  +++ ++   a+aVn++++lh ll+ ++s+e+    vL++ k l+P +v+vveqea+hn++ F erf+eal+yys++fdsle +    
  Zosma135g00380.1 400 ADLESYMFESHSdSSAVAVNSIMELHPLLSTQGSIEK----VLETAKALKPAIVTVVEQEANHNGPIFIERFTEALHYYSSMFDSLEGGsttt 488
                       ********9988799**************99999999....*********************************************9885677 PP

              GRAS 275 .......lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv 359
                              ++ +   + ++ +e++g++i +vvaceg+er+erhet+++W++r+ +aGF+ +pl  +a kq+++ll++++  +gyr+ee++g+l+
  Zosma135g00380.1 489 sgdgeigIGGDGGYDPMMAEEFVGKQILDVVACEGRERKERHETAKEWKNRFCSAGFQMAPLCFNAFKQVSMLLERYAgTEGYRIEENDGCLM 581
                       7777766666667788888888*********************************************************************** PP

              GRAS 360 lgWkdrpLvsvSaW 373
                       l+W +rpL++ SaW
  Zosma135g00380.1 582 LCWYTRPLFTSSAW 595
                       ************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120411.5E-134979IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011295.5E-1849152No hitNo description
PfamPF120416.3E-9112144IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098560.819198575IPR005202Transcription factor GRAS
PfamPF035141.3E-119224595IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0042176Biological Processregulation of protein catabolic process
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MKRSHQGVVA AGDARSGGCG ASSSSSSAKA KHVNKEEEDL KLVQDGGEDV LLAALGYKVR  60
SSSMADVAQK LEQLEMAMVI GSGGFSGGFL NGGSSFPGVG VVDNTNTNTN NDCSVLAHLA  120
SESVHRNPSD LNSWLDNMLS EIHVPNLPPS SQSQSQSPGP SECDFATGLS VIDDLTAIIP  180
VDSRKKKRMK TSTTSPISTA VIPQQLQQMP VVLVEESQAT GIRLIHALLS CADAAQQENY  240
LLAESLIKQI TLLTTSQGGA MRKVATYFVG ALARRIYPRS PPSSPLSPPS DLLEMHFYEA  300
GPYLKFAHFT ANQAILEAFA DKTHVHVIDF GMKQGMQWPA LIQALAIRPG GPPLFRLTGI  360
GPPHSNDSDA LQVVGWRLAQ FAESLHVKFE YRGFVANSLA DLESYMFESH SDSSAVAVNS  420
IMELHPLLST QGSIEKVLET AKALKPAIVT VVEQEANHNG PIFIERFTEA LHYYSSMFDS  480
LEGGSTTTSG DGEIGIGGDG GYDPMMAEEF VGKQILDVVA CEGRERKERH ETAKEWKNRF  540
CSAGFQMAPL CFNAFKQVSM LLERYAGTEG YRIEENDGCL MLCWYTRPLF TSSAWCLP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-5523159526378Protein SCARECROW
5b3h_A1e-5523159525377Protein SCARECROW
5b3h_D1e-5523159525377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00611ChIP-seqTransfer from AT2G01570Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002312450.30.0DELLA protein GAIP-B
SwissprotQ8S4W70.0GAI1_VITVI; DELLA protein GAI1
TrEMBLA0A0K9PYX50.0A0A0K9PYX5_ZOSMR; GAI-like protein 1
STRINGXP_002527794.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99838138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.11e-170RGA-like 2