PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G144744_P02
Common NameZm.97982
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRAS
Protein Properties Length: 584aa    MW: 61679.2 Da    PI: 4.8811
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G144744_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS460.11.3e-1401975771374
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl...fsevsP 89 
                        lv++Ll+cAeav+++++++a+al++++  las++g +m+++aayf eALa+r++r        ++p ++s  +  ++++a+ l   f+e +P
  GRMZM2G144744_P02 197 LVHALLACAEAVQQENFSAAEALVKQIPMLASSQGGAMRKVAAYFGEALARRVYR--------FRPPPDS--SLLDAAFADLLhahFYESCP 278
                        689****************************************************........3333333..34444444444445****** PP

               GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181
                        +lkf+h+taNqaIlea++g++rvH++Df+i+qG+QWpaLlqaLa Rp+gpps+R+Tgvg+p+++++++l+++g++La+fA++++v+f+++ l
  GRMZM2G144744_P02 279 YLKFAHFTANQAILEAFAGCRRVHVVDFGIKQGMQWPALLQALALRPGGPPSFRLTGVGPPQPDETDALQQVGWKLAQFAHTIRVDFQYRGL 370
                        ******************************************************************************************** PP

               GRAS 182 vakrledleleeLrvkp......gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
                        va +l+dle+ +L+ +        E++aVn+v++lhrll+++++le+    vL +v+ ++P++v+vveqea+hns++Fl+rf+e+l+yys++
  GRMZM2G144744_P02 371 VAATLADLEPFMLQPEGddtddePEVIAVNSVFELHRLLAQPGALEK----VLGTVRAVRPRIVTVVEQEANHNSGTFLDRFTESLHYYSTM 458
                        *************55444455579***********************....***************************************** PP

               GRAS 268 fdsleak..........lpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sd 347
                        fdsle             p+++  +++++++++lgr+i+nvvacegaer+erhetl++Wr+rl+ +GF pv+l+++a+kqa++ll+ ++ +d
  GRMZM2G144744_P02 459 FDSLEGAgagsgqstdaSPAAAgGTDQVMSEVYLGRQICNVVACEGAERTERHETLGQWRSRLGGSGFAPVHLGSNAYKQASTLLALFAgGD 550
                        ****777788888888644444799******************************************************************* PP

               GRAS 348 gyrveeesgslvlgWkdrpLvsvSaWr 374
                        gyrvee++g+l+lgW++rpL+++SaWr
  GRMZM2G144744_P02 551 GYRVEEKDGCLTLGWHTRPLIATSAWR 577
                        **************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120419.3E-3638114IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011291.1E-3238120No hitNo description
PROSITE profilePS5098567.87171556IPR005202Transcription factor GRAS
PfamPF035144.4E-138197577IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0042176Biological Processregulation of protein catabolic process
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MKREYQDAGG SGGDMGSSKD KMMAAAAGAG EQEEEDVDEL LAALGYKVRS SDMADVAQKL  60
EQLEMAMGMG GVGGAGATAD DGFVSHLATD TVHYNPSDLS SWVESMLSEL NAPPAPLPPA  120
TPAPRLASTD SAREPKRMRT GGGSTSSSSS SSSSMDGGRT RSSVVEAAPP ATQASAAANG  180
PAVPVVVVDT QEAGIRLVHA LLACAEAVQQ ENFSAAEALV KQIPMLASSQ GGAMRKVAAY  240
FGEALARRVY RFRPPPDSSL LDAAFADLLH AHFYESCPYL KFAHFTANQA ILEAFAGCRR  300
VHVVDFGIKQ GMQWPALLQA LALRPGGPPS FRLTGVGPPQ PDETDALQQV GWKLAQFAHT  360
IRVDFQYRGL VAATLADLEP FMLQPEGDDT DDEPEVIAVN SVFELHRLLA QPGALEKVLG  420
TVRAVRPRIV TVVEQEANHN SGTFLDRFTE SLHYYSTMFD SLEGAGAGSG QSTDASPAAA  480
GGTDQVMSEV YLGRQICNVV ACEGAERTER HETLGQWRSR LGGSGFAPVH LGSNAYKQAS  540
TLLALFAGGD GYRVEEKDGC LTLGWHTRPL IATSAWRVAA AAAP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A4e-611805761377Protein SCARECROW
5b3h_D4e-611805761377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.979820.0cell culture| ear| meristem| ovary| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G144744
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Function -- GeneRIF ? help Back to Top
  1. the polymorphism pattern is consistent with two interfering selective sweeps at D8.
    [PMID: 18780751]
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00611ChIP-seqTransfer from AT2G01570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G144744_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0339210.0BT033921.1 Zea mays full-length cDNA clone ZM_BFc0044H19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001354393.10.0DELLA protein DWARF8
SwissprotQ9ST480.0DWRF8_MAIZE; DELLA protein DWARF8
TrEMBLA0A317YC320.0A0A317YC32_MAIZE; DELLA protein DWARF8
TrEMBLB7ZY700.0B7ZY70_MAIZE; Dwarf plant8
STRINGGRMZM2G144744_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein
Publications ? help Back to Top
  1. Peng J, et al.
    'Green revolution' genes encode mutant gibberellin response modulators.
    Nature, 1999. 400(6741): p. 256-61
    [PMID:10421366]
  2. Thornsberry JM, et al.
    Dwarf8 polymorphisms associate with variation in flowering time.
    Nat. Genet., 2001. 28(3): p. 286-9
    [PMID:11431702]
  3. Tenaillon MI, et al.
    Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.).
    Proc. Natl. Acad. Sci. U.S.A., 2001. 98(16): p. 9161-6
    [PMID:11470895]
  4. Remington DL, et al.
    Structure of linkage disequilibrium and phenotypic associations in the maize genome.
    Proc. Natl. Acad. Sci. U.S.A., 2001. 98(20): p. 11479-84
    [PMID:11562485]
  5. Andersen JR,Schrag T,Melchinger AE,Zein I,Lübberstedt T
    Validation of Dwarf8 polymorphisms associated with flowering time in elite European inbred lines of maize (Zea mays L.).
    Theor. Appl. Genet., 2005. 111(2): p. 206-17
    [PMID:15933874]
  6. Camus-Kulandaivelu L, et al.
    Patterns of molecular evolution associated with two selective sweeps in the Tb1-Dwarf8 region in maize.
    Genetics, 2008. 180(2): p. 1107-21
    [PMID:18780751]