PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G034638_P01 | ||||||||
Common Name | LOC100274570, TCP20, ZEAMMB73_886186 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | TCP | ||||||||
Protein Properties | Length: 315aa MW: 33080.4 Da PI: 6.7701 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 123.1 | 3.1e-38 | 86 | 157 | 2 | 73 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t++WLlqqa+pai ++tgt++++as+ GRMZM2G034638_P01 86 APKRSSNKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETVQWLLQQAEPAIVAATGTGTIPASAL 157 789****************************************************************99766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.7E-31 | 91 | 160 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.039 | 92 | 146 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MDPKFPPPPP LNKTEPTTAT TTTTSTAQQQ QQQLDPKDYQ QQQQQPAQHL QIQIHQSQQD 60 GGGGGKEQQQ LQVVAQPGER RQQALAPKRS SNKDRHTKVD GRGRRIRMPA LCAARIFQLT 120 RELGHKSDGE TVQWLLQQAE PAIVAATGTG TIPASALASV APSLPSPTSG LARPHHHMWA 180 PSAGFSSPSF LNSAAAGTGD AAGIMQRMGI PAGFELPGAS AAGATLGAGG HIGFAPMFAG 240 HAAAMPGLEL GLSQDGHIGV LAAQSISQFY HQVGAAAGGG GQMHHAHGHH HHHHQQQEDG 300 EDDREDGESD DESGQ |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G034638 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00636 | PBM | Transfer from Glyma.19G095300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G034638_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT043390 | 0.0 | BT043390.1 Zea mays full-length cDNA clone ZM_BFc0176F09 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001142396.1 | 0.0 | uncharacterized LOC100274570 | ||||
Swissprot | Q9LSD5 | 1e-54 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | B4G202 | 0.0 | B4G202_MAIZE; TCP transcription factor | ||||
STRING | GRMZM2G034638_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2864 | 32 | 69 | Representative plant | OGRP922 | 14 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 6e-51 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G034638_P01 |
Entrez Gene | 100274570 |