PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.19G095300.1.p

Common Name

GLYMA_19G095300

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

TCP

Protein Properties

Length: 331aa MW: 35321.1 Da PI: 9.4942

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.19G095300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	116.7	2.9e-36	66	156	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg... 88 a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tgt++++as+ a+ +s s + ss + Glyma.19G095300.1.p 66 APKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAGNSLSPQGSSLSsal 155 789******************************************************************888444444444433333122 PP TCP 89 k 89 + Glyma.19G095300.1.p 156 H 156 0 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	6.6E-32	71	178	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.016	72	126	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008361	Biological Process	regulation of cell size
GO:1900056	Biological Process	negative regulation of leaf senescence
GO:0005634	Cellular Component	nucleus
GO:0000987	Molecular Function	core promoter proximal region sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MDPKGSKQQQ PQEVVPKFLS LPQHHYQQQG NSNNNNMGEN KPSEVKDFQI VVAAEKDESK 60 KQQQLAPKRS SNKDRHTKVE GRGRRIRMPA LCAARIFQLT RELGHKSDGE TIQWLLQQAE 120 PSIIAATGTG TIPASALAAA GNSLSPQGSS LSSALHHQHQ KIDELGCGSG GSSRASWQMV 180 GGNLGRPHLG VATTGLWPPH VSGFGFQTAT TTTTTTSSGP SNATLATESS NYLQKIAFPG 240 FDLPTSATNM GHMSFTSILG GAGSQQMPGL ELGLSQDGHI GVLNPQALNQ IYQQMNHQAQ 300 AGRVHQQHQH QQQQHQQTPA KDDSQGSGGQ *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.33531	0.0	cotyledon\| epicotyl\| hypocotyl\| leaf\| root\| seed coat\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269\|PubMed:12631321, ECO:0000269\|PubMed:16123132}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00636	PBM	25215497	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.19G095300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235044	0.0	AC235044.1 Glycine max strain Williams 82 clone GM_WBb0005G15, complete sequence.
GenBank	AC235265	0.0	AC235265.1 Glycine max strain Williams 82 clone GM_WBb0041K04, complete sequence.
GenBank	AC236296	0.0	AC236296.1 Glycine max strain Williams 82 clone GM_WBb0094F23, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001304347.2	0.0	transcription factor TCP20-like
Refseq	XP_028218369.1	0.0	transcription factor TCP20-like
Swissprot	Q9LSD5	5e-82	TCP20_ARATH; Transcription factor TCP20
TrEMBL	A0A445FED1	0.0	A0A445FED1_GLYSO; Transcription factor TCP20
TrEMBL	I1N7U7	0.0	I1N7U7_SOYBN; Uncharacterized protein
STRING	GLYMA19G26560.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3339	32	69
Representative plant	OGRP922	14	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	6e-77	TCP family protein

Link Out ? help Back to Top
Phytozome	Glyma.19G095300.1.p

Publications ? help Back to Top
Zhu P, et al. Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972 [PMID:27708161] Wu JF, et al. LWD-TCP complex activates the morning gene CCA1 in Arabidopsis. Nat Commun, 2016. 7: p. 13181 [PMID:27734958] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968] Zhang N, et al. MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis. Plant J., 2018. 93(1): p. 66-78 [PMID:29086441] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692]