PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015885281.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 308aa MW: 35341.1 Da PI: 5.2063 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.6 | 1.2e-19 | 62 | 115 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++++q+++Le+ Fe ++++ e++++LA++lgL+ rqV +WFqNrRa++k XP_015885281.1 62 KKRRLSSDQVKALERNFEIENKLEPERKAKLAEELGLQPRQVAIWFQNRRARWK 115 45689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 127.8 | 4.6e-41 | 62 | 153 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkrrls++qvk+LE++Fe e+kLeperK++la+eLglqprqva+WFqnrRAR+ktkqlE+dy+ Lk++ydal+ + e+L++++e+L+e++++ XP_015885281.1 62 KKRRLSSDQVKALERNFEIENKLEPERKAKLAEELGLQPRQVAIWFQNRRARWKTKQLERDYNLLKTNYDALNINYENLRQQNEALNEKIRQ 153 9**************************************************************************************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.46E-19 | 55 | 119 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.443 | 57 | 117 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.9E-18 | 60 | 121 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 6.0E-17 | 62 | 115 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.45E-16 | 62 | 118 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-20 | 64 | 124 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 3.7E-6 | 88 | 97 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 92 | 115 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.7E-6 | 97 | 113 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 7.1E-14 | 117 | 157 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0030308 | Biological Process | negative regulation of cell growth | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MKRFSSSDSL GALISICPPK DHAGLVNIEE RKVKESHGYS KEFQAMLDSL DQEDSVEEFT 60 GKKRRLSSDQ VKALERNFEI ENKLEPERKA KLAEELGLQP RQVAIWFQNR RARWKTKQLE 120 RDYNLLKTNY DALNINYENL RQQNEALNEK IRQLKAKVCR ESAESNPSVK EEESPTSRCE 180 IESSTALDHR KNSDVQDNSD KTGSEMYGNM KLFKDGSSDS DSNGIIIMKE ESNANFSLGL 240 NGSFSSSNSA TTNWFQISES RPSSFHPVKV CQTQFMRMEE NGLFSNEESC NFFSVDQAPT 300 LHWYFPEQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 109 | 117 | RRARWKTKQ |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00051 | PBM | Transfer from AT4G40060 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015885281.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015885281.1 | 0.0 | homeobox-leucine zipper protein ATHB-6-like isoform X1 | ||||
Refseq | XP_015885284.1 | 0.0 | homeobox-leucine zipper protein ATHB-6-like isoform X1 | ||||
TrEMBL | A0A2P5D9T2 | 1e-120 | A0A2P5D9T2_TREOI; Octamer-binding transcription factor | ||||
TrEMBL | M5XLY1 | 1e-120 | M5XLY1_PRUPE; Uncharacterized protein | ||||
STRING | EMJ26949 | 1e-121 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1868 | 34 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22430.1 | 3e-61 | homeobox protein 6 |